HsaINT0160086 @ hg19
Intron Retention
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:18629]
Coordinates
chr12:104156052-104157386:+
Coord C1 exon
chr12:104156052-104156180
Coord A exon
chr12:104156181-104157269
Coord C2 exon
chr12:104157270-104157386
Length
1089 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ATGCTTGTCTTTCCAAACAGTCG
3' ss Score
8.72
Exon sequences
Seq C1 exon
ACCTTGACCCACACTGGCTTGGGAGCAGGGATCTTCTTTGCCATCATCCTGGTGACTGGGGCTGTTGCCTTGGCTGCTTACTCCTACTTTCGGATAAACCGGAGAACAATCGGCTTCCAGCATTTTGAG
Seq A exon
GTAAGAGAGAAAAATGGGAACATGATGATGGGGTCCTCTCCAAAAACCCAGTCCCTGGACCTGGGCTGCTTCAGTCGGTGGCTGCGCCAGAGTCCTCACCCAGAAGCAGTGTGTCACACAGTAGCAGGGGCGGCCACCCACCCCACGCTTACTGCTGCTTGGATGGGGTCCCTGCTCTTAAGAGGAACAGCAGTGGTGGTTCCAAGCCCCTCCTTCTGGCTGAGACAGGGCTTGGCAAGGAGAGAACCCACCCTGAGCCTCTGTGCCAGGGGTTTGGCCTGGAGGCACATTCACTAGGACCTAGGAGTCTTGTTTACCTTGGAGGATTCACTGCACAAGCACACCCCATGACCTAGCTTGGGCTTCAAGACCGGCTCTGAGAACTGGGGGACAGGGCTAGGGACCCTACACAGCCAGAGGCTTTATGCTGCAGCCAGTGACACTCATTTCTATTTGAACAGTTGAGTCCACATCCCAATCAGCAGCCAGCTCTTGACTGGCTGTGTAAGAATATGGCCGGGGCAGCAGCACAGCGGTTGAGCATCTTTCCTTATGGACTTTGTCCTCCTCTCTGGCCCACCCTCTCCTCAAAACACTCCTGGTAAAGGCTGTGGTGCAGAGCCCCCAAGCAGCAGTTTGCTGCCTTCTGGCAGACAGCTTGTATATTTATAAGCTCCAGGGAAAATCTCAAAATCCCCATTTTTAGCAAAAGTGTATAGGCTGTATGACTGCATTTATATTAAGTTAAAGGATAGGCAACACCACTTCAGGGTGATGGGAGTCAGAACAGCAGTTACCCTGGGTGGCAGGCACCAGCAGGCTAAGAGCATGTGAACACATCCTGGGGTATGGAAATGCCCTATGTGCCGATTTGGTGGTGATCACAAATGGGCAGACATCGGTAAGATGTCACTGAGCTGAATCTAAAGGTTGGTAAATTTTATTATATGTGAATCATCTCTCAACAAAGTACTGTTAAAAAAGGAAAAGCTCCCAGAGGCAAAGGGTGGCTTGCTTTACCTGCCAACTTGGCTGAGACGCTCCTGCTTTGGGGATGCTCCTGGCTTTCATGCTTGTCTTTCCAAACAG
Seq C2 exon
TCGGAAGAGGACATTAATGTTGCAGCTCTTGGCAAGCAGCAGCCTGAGAATATCTCGAACCCCTTGTATGAGAGCACAACCTCAGCTCCCCCAGAACCTTCCTACGACCCCTTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011-STAB2:NM_017564:67
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTGACCCACACTGGCTT
R:
CGTGAAGGGGTCGTAGGAAGG
Band lengths:
246-1335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)