RnoINT0144398 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27371656-27372293:-
Coord C1 exon
chr7:27372275-27372293
Coord A exon
chr7:27371773-27372274
Coord C2 exon
chr7:27371656-27371772
Length
502 bp
Sequences
Splice sites
5' ss Seq
CAAACACAG
5' ss Score
-15.7
3' ss Seq
GTCCTTCTCTTTCTGAACAGTCA
3' ss Score
9.51
Exon sequences
Seq C1 exon
GGGATTCTCCAAGTTCCAA
Seq A exon
ACACAGTGCAGAGAATGAACTAGGGTGACAACGCCTAGCCTTGGCTCACAGAATCCCAATCCTACTGGATCATGCGTCACCCACTATGCCCTGCAAATGCCGCACACAACTGTTTCTGCCCTCCTAAGTAGCTCAAAATGGGGACTACATCTCAAGGCACGTTTGGGTGAGAAGATTCAAACCATCACGTTTGAATATGGTAACCAAGTATGCATATAATATGTAACGTAAGTTCAGGGATGACCAGGTAACAAGAGGCTCAACAATGCTTACGGTAGGAAAATCGGCAGCATAAACTATGGGAACATTTCTCAGGGGTAGAAATGTCCTATGGGCCAGTTTGGAAGACATGTTTGGAAGATGGGTCAAATATGTAAGTTGCCGTTTGGGCCCAGTTAGTCATCGCAATACAGTGTTGCTGAGAAGGCTCCAGAGGAGAGGAATGGTTTGGGGACAGGGGACAGTCCTGCCTCTCAACCCTTGTCCTTCTCTTTCTGAACAG
Seq C2 exon
TCAGAAGAGGACATTGATGTCTTGGCTTTTGGCAAGCAGCAGCCCAAGAATATCGCAAACCCTCTGTATGAGACCTCAGCGCCGGCACCCCCAGAGTCCTCCTGTGACCCCTTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:78
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.487
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]