GgaINT0112673 @ galGal4
Intron Retention
Gene
ENSGALG00000012751 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr1:54928329-54929597:-
Coord C1 exon
chr1:54929469-54929597
Coord A exon
chr1:54928449-54929468
Coord C2 exon
chr1:54928329-54928448
Length
1020 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATTTGTGTTATTTTATGTAGTCA
3' ss Score
4.96
Exon sequences
Seq C1 exon
GCTCATCTCCACGCCGGTACAGGGACAGGGATATTCTTTGGCATCTGCCTGGTTATTGGAATTGTGGCCTTCATCGGATACTCGTACCTCCGATTCAGGAAGAAAAACACAGGCTTCCAGCACTTCAAG
Seq A exon
GTAAGAGGCAGAGGAGTGTAAAGCAAGCAGCCTGCACTTCCCAGACCCACTGTGCTTTCCAGATCTCACAGGTTCCAATTGATCCTTACATTTTATTAAGCTAGAAACATTCCAGATCACTTTATGCTTGAACTGCTCACACTAACACATGACAAAGGCTCCCACATTTGGCTTGGGAACTCGGTTACTTTGCCTGCTGCACCATGCTGGGGTGGTCTACCAGGGCTCCTGCTCTCACTGACACTACCAACAGCAAGGCCTGGCCTAAAGCTTACTTCCAAACAGCACCAATGCAGAAGGCCTTGTCTCTCCAGAAACGTCAGCTTTAGGGAAGCAGATCAACTGAACTACTTAAGAGATGAACTTATCCTCTTCCCCTCCCTTCCACGGCACTGCTAATAGTTCTACAGCTCCGGAGGTTGAGACATTTGATAGAGAGACAAGCAAATCAGCAGATTGAGAAGTATAAATTCTTATACTGATGTGCCCTCATGCTTGCTTTCTCTAACTTTCTTGTTAGCCTCACAGAGCATCGTGATGATGCAAAGTCAGCCAGTAGAAGCCAAGCTATCCAGAGACAAGGAAGTGTGACAAAAAAGTGTTAAAAATCAACCCCAAAGAAAGCAAACTCCCTCCTATTCTAGCTTCTGTACGTGTATAGTATTCTAGAAAGAAAAAAGGAGCCATGAACCAGAGGAAACGCTTGTATTTTTATATTACAGCAGTGAGCACACTTAAGAACAAGCACATACTTTTCATGCTAGGCGCAATGCCAGTGCAGTACTTCCTCTCCCTTCTTCACAGTGGCTTAAAAATAAGAAGGGGGGAAAATGGTTCAACATTAAGTGATCCATAAGAACACAACACCCAGTGCAGAGTTCATGCCTGGAGACACAGGGTTAGATGATAAAGCCAGTCCATTCACAGCACTGCAGTAGTCAGTAGAGAAGGTTAAGTGCCCCACTTAATGCACCACAGGAGGTGGATGGATTTTAAGGACATTTGTGTTATTTTATGTAG
Seq C2 exon
TCAAAAGATGACACTGATGTAACATCACTGGACAAGCCCCAGCCTTCAAATATCACCAACCCCTCATACGAAAGTTCTTCTGCACTGACTCCATCAGAACCCACTTACGATCTTTTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751:ENSGALT00000020806:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCTCCACGCCGGTACAG
R:
TGAGAAAAGATCGTAAGTGGGT
Band lengths:
248-1268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]