GgaINT0112673 @ galGal3
Intron Retention
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56821970-56823238:-
Coord C1 exon
chr1:56823110-56823238
Coord A exon
chr1:56822090-56823109
Coord C2 exon
chr1:56821970-56822089
Length
1020 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATTTGTGTTATTTTATGTAGTCA
3' ss Score
4.96
Exon sequences
Seq C1 exon
GCTCATCTCCACGCCGGTACAGGGACAGGGATATTCTTTGGCATCTGCCTGGTTATTGGAATTGTGGCCTTCATCGGATACTCGTACCTCCGATTCAGGAAGAAAAACACAGGCTTCCAGCACTTCAAG
Seq A exon
GTAAGAGGCAGAGGAGTGTAAAGCAAGCAGCCTGCACTTCCCAGACCCACTGTGCTTTCCAGATCTCACAGGTTCCAATTGATCCTTACATTTTATTAAGCTAGAAACATTCCAGATCACTTTATGCTTGAACTGCTCACACTAACACATGACAAAGGCTCCCACATTTGGCTTGGGAACTCGGTTACTTTGCCTGCTGCACCATGCTGGGGTGGTCTACCAGGGCTCCTGCTCTCACTGACACTACCAACAGCAAGGCCTGGCCTAAAGCTTACTTCCAAACAGCACCAATGCAGAAGGCCTTGTCTCTCCAGAAACGTCAGCTTTAGGGAAGCAGATCAACTGAACTACTTAAGAGATGAACTTATCCTCTTCCCCTCCCTTCCACGGCACTGCTAATAGTTCTACAGCTCCGGAGGTTGAGACATTTGATAGAGAGACAAGCAAATCAGCAGATTGAGAAGTATAAATTCTTATACTGATGTGCCCTCATGCTTGCTTTCTCTAACTTTCTTGTTAGCCTCACAGAGCATCGTGATGATGCAAAGTCAGCCAGTAGAAGCCAAGCTATCCAGAGACAAGGAAGTGTGACAAAAAAGTGTTAAAAATCAACCCCAAAGAAAGCAAACTCCCTCCTATTCTAGCTTCTGTACGTGTATAGTATTCTAGAAAGAAAAAAGGAGCCATGAACCAGAGGAAACGCTTGTATTTTTATATTACAGCAGTGAGCACACTTAAGAACAAGCACATACTTTTCATGCTAGGCGCAATGCCAGTGCAGTACTTCCTCTCCCTTCTTCACAGTGGCTTAAAAATAAGAAGGGGGGAAAATGGTTCAACATTAAGTGATCCATAAGAACACAACACCCAGTGCAGAGTTCATGCCTGGAGACACAGGGTTAGATGATAAAGCCAGTCCATTCACAGCACTGCAGTAGTCAGTAGAGAAGGTTAAGTGCCCCACTTAATGCACCACAGGAGGTGGATGGATTTTAAGGACATTTGTGTTATTTTATGTAG
Seq C2 exon
TCAAAAGATGACACTGATGTAACATCACTGGACAAGCCCCAGCCTTCAAATATCACCAACCCCTCATACGAAAGTTCTTCTGCACTGACTCCATCAGAACCCACTTACGATCTTTTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751:ENSGALT00000020806:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.700
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCTCCACGCCGGTACAG
R:
TGAGAAAAGATCGTAAGTGGGT
Band lengths:
248-1268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]