BtaINT0141884 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67780761-67784730:+
Coord C1 exon
chr5:67780761-67780877
Coord A exon
chr5:67780878-67784337
Coord C2 exon
chr5:67784338-67784730
Length
3460 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CACAGACTTCTCTTTTCCAGGAC
3' ss Score
9.18
Exon sequences
Seq C1 exon
TCGGAAGAGGACATTGACGTTGCAGCTCTTGGCAAGCAGCAGCCCGAGAATATCTCGAACCCCATGTACGAGAGCACAACTTCAGCAACCCCGGAACCTTCCTACGACCCGTTCACA
Seq A exon
GTGAGTTTGTCTTTTCATCTAAAACAGGTTCAGCTGAGGTTGGTGGGGGGCGGCGGGTAGGGCAATGATGTCTTTCAGCAGACCTGTGTAGAGCACTGCGCCAAGAAATCTCACTTCTAGGACACGTCTCCAGGCTACAAGCCTAGAAGCAAGCTGGGTGAAGCCCTGTGGTCGTTCTGTGTTCTGAGCTCTCCTGGGTGGATTGTGGATTGCAGAGGCGTCCATCGGTTAGATCTAGAAAAGAACTAGGGGTTGCACAACCCCAACCTTGGGACCGGGTGAGAGGTGACAAGGAGAAGAAACCTTGGGCTGAATTCTGCCACAACCACTGACGAGGTAGCAGGCTCAAAGGAAGACCTGAAACTGCTTCAACATTTACACTGTTGTCCGGGATTCTTCTGCCTGTTGTCAGAGCTGCTTCTTACTTTAGGAGCTACGTCTCTTTGACGAGGTTTTTTTTTTTTTATCTAGGGGCATGGGTCCTGCTCTGGTCTTCCAAGAAAGGGCCACTTGTTTCTAGAATTAGTGACCCTTGAGCTTGGATGGAGCCGCCACTGACCGCAGCGCTGTGGCAGGGAACCCATTCACATCAAATGTGCGAGACACACTCTGCCTATGTTACCAGGTCTGGACTGAGAAGCTAAGAGTGAAATAAGAGAAAACATACTGGTCTTTGCCCCAGAGCTCATAAACTCCTCTGATTTCTTAAGTGGTGAGAATACCAGGGGCATCTTTTGTTCTGAGATTCTGGGTTGGCTCCTGTATGCCTTCTGGTCACCAGAAAGACCAAACCATGATTCGAAGGTTGGGATTTTTCAGTTCAACCCTTCACTCTCCAGAGGGAGAGGCCAGAAATGTAGCTGATAGTCGATGTGAGGAAGTCTCCATAAAAATTCCCCCCCCTTTTTTTAAATGTGTGTGTAATCTATTATAGATTTCAGTTTGTAGTTACCGTGATGTTTTGTTATAGCAGTCCATATATAAACAAGATTATCTTAACTTGCTGGTCTTTTAATTTCAAATACATTTCCCATATCCTGCATTTGTGTTCTCCTCATGACTGCTGGTTTTGATATCACTTCTGTGTGATATCCATCCTTTACTGGATGTTTGCCTTTACCAATGAGCTTTTCTAGTCATAATTTTGTTTCTAGTTGTGGCCTTGTCCACTTAAGAGTAGTTCCTTTAGCATTTGTTAGAAAGGTGGTCTGGTGGTGCTGAATTCTTAGCTTTTGCTTGTCTGCAAAGCTTTTGATTTCTCTGTTAAATCTGAATGAAAGCCTTACTTGTAATTTTGGTGTTTTCATAAGAGGTGAGCTCAAATCCTTCTATTCTACCATCATCCATAAATCCCAGTGGTAGGGGGTTCAGACATCTTCCAGGGTGGTGAACATATCCACACTGGGAGGGTGATGCACCTGAAGTCCACGGGGCAGTGGCTATACTGAATTTTTATAAGTTGGCATTGAAACATTACAGCATTCTATTGTACCATTTTAAGCTTATAGAATGCAACACTTGTTGTTATTTTTCTAGTGAACCAAATGCAACTCTCCCATGGTTCTCAGTGCCTGTGGTAACGTAGATTTAATATATTTGCAATACGGAAAATAATCAGATCATAAGTCCTATTGCTTTTTAATCAAACCCATGTAAAAGTTTCTAGTCCAGATTCAAGGGCAAGTTCAGTTAAGCTGCATTTATTAACCATCTATTTCTATAAGCCTTGTGATATGGAAATCAACCTCATTTTAAAAGCAAGGGGAGTCCAAATGCTTGGGGCTGGTGCACTGGGACGACCCAGAGGGATGGTATGGGGAGGGAGGAGGGAGGAGGGTTCAGGATGGGAAGCACATGTATACCTGTGGTGGATTCATTTCGATATATGGCAAAACCAATACAATATTGTAAAGTTTAAAAATAAAATAAAATTTTAAAAAGTAACATAAAAGCAAGGGGAAAAATTTCATATTCTGTTCAGGGCTCTCCATGGCCTCTCAGCTGTCTGGCTTTTCTCGGGGCCCCATGAGCACTGTCAATGGAATACTCACCTGAGGCAGGTGAGAGTACCCTAAGAGACAGGACTCGGTTCAACCTTCCTAATCAGACCAGGTGGCAAAAATATTCCAGTTACAGGAATCCTAAGCTGAGGGCACCAGCCCCAAATCTGCTTTATTCTCATGCCTTTTATACTGAAGGAGCAGATGTTGCCTCTAGACGACCTGGAGCCAATCCACACATTGTGAGCATCCATTATGTGAATGGACAGAGCTGCGGTCTGATCAGAGCCACAGACAGCAGGAGGTTCAGGAGGCCGCCTCTGGACTGTTGCTTCTGATCAGACCCAGTTCAGGATGAACTGTCAACCGGAAAGGATTTTTTTTGTAACCAGAGTAACAGCCATGTTTTGTGGGGTGGTTTTATTTTCCTTAGAGTAGTATCTAACTTAATTCACACACCTCCCTGTCAGGTAAATATTATTAGGCCCCTTAATACATGAGAAAAATTCTGCAGAGGTGAAATGACTTGTCCACATGTTCAGGCCGAGACCATACCCCATCTTCAGGCCACGAGCCAGGACAGCAGCGTGAAGCCACCCTCGCTCCCACCGGATGTATTCACAAGAGACTGCAGGAAAAATAGTGTTTTTAGGCTGAAAGAGAGGAAAAGTTTTCCTTGACCCTCTGATGATTCGTGGCTGGGCCTGAAAAGTAAACTGGTAAAGACAGACTCACAGAAGAACATATATATTTTATTGAACATTTATGTGTACATGGGAGCCTTCATGAGAAAATGAAGACCCAAAGAAGGGACCAGAACAGGAAGCCTTTGCACCTTTTAGACTAAATGTGTGAGGAATTGACGAGAGAGCTTTGGACCTAGAGGTAGTAAATGGTGAAGAAGTCACTAGGAAGATAAGGGTTAGTGAACAAGGTTTGTTTGTACAGGTTTCTTGGCCCCCAGCTCCCCAGAAGTGATGCATCTTCTTTCCTCTAAAAATTTCATGAGGGAATTTTATTACCTGTTTCAGGGGAAAAGGGTAGGGGGCAGAGTTAGTCAGAGTGACCTTCCTGCTTCTGTCATGTAAAAGAATTCCTTCAGTTTGACATATAACAAGCCAAGTTACTGGATTGGGGGTAGCATGTCCTAAGGGCTTTCCCCAGGGCTTCAGTGGTAAAGAATTCACCTGCCAATACAGGAGATACAGGTTCAATCCCTGGGTCGGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCTTGGAAAATCACATGGACAAAGTAGCCTGGTGGGCTAGTCCACGGGGTCACCAAAGAGTTGGCCATGACTTAGCAACTAAACAACCAGTGTGCCCTAAACCCGCCAAGGCCTAAGACCAGTAGCCAATATTATGTTCAACCTCGAAGGATGCACCTTCTGCCTGGTTCACAGACTTCTCTTTTCCAG
Seq C2 exon
GACCCTGCCGACCAGCTGCTGGACAGCAGTGACCCCCTGGGGGCACTATGAGGGCTGGACCTGCCCCCTCCAGACATCACCGCTGCCACCTGGGTCCCCAGAGCCACCTCAGAAAGGCCATCAACTGTGAATCCTCAGCCCCAGTTGACTGTGGGAAATGTAAGCTCCTTTAACATTTCAAAGTCTGGAGCACTCAAGCCATACCTCATCGCTTCAGTTGATCCAGGGGATATTCTGTTTCTGTGGGTGAGAGACCATATTAAGCCTACCCACCACCCAGGGGACTGCTCCCTCCCTGACCCTCTGCTATCTTCCCTAACCTTCAGTAGCACCTTTTACCTTTTGCCCAGCACTCTAGTGACCTTGTCTTATTTCCCTGTTAAGACTGTAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010:ENSBTAT00000007896:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]