HsaINT0160087 @ hg19
Intron Retention
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:18629]
Coordinates
chr12:104157270-104160502:+
Coord C1 exon
chr12:104157270-104157386
Coord A exon
chr12:104157387-104160063
Coord C2 exon
chr12:104160064-104160502
Length
2677 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TACAACCCTCTCTTTTCCAGGAC
3' ss Score
11.29
Exon sequences
Seq C1 exon
TCGGAAGAGGACATTAATGTTGCAGCTCTTGGCAAGCAGCAGCCTGAGAATATCTCGAACCCCTTGTATGAGAGCACAACCTCAGCTCCCCCAGAACCTTCCTACGACCCCTTCACG
Seq A exon
GTGAGTTTGCATTCTTATCTAGGAATAGGTTCCCTTGGGGTACAGGGGAATGATGTCTTTTAGGAAATTTCAGTGGAGATCTTTGTACCAAAGAAGGTTCATTTCTAGAATGTATGTCAGGTAACAAGCCTAAAAGCCAGTTTTGCAAGCTGACTGAAGCCAGTGTGGTTGCTCAGAGTTCCTGGGTTCTCTTGGGTAGACAGCAGAATCCTTGAACAAACAGAGACAGGCGAGAACAAGAGGTTGTTATCCAAGCCCAATCTCATGACCAGGTGAGATGCCACAGTGAAAAAAAGTCTTGGGCTGAATTCTGCTGCAATCATTTATGAGGTAGCAGGTGCAAAACAAGATGGAAAAAGGATTTTTCCTTTAGATGTCCTTTTTTTTTTTTCTTTGAGATGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCGGCTCATTGCAACCTCTGCCTCCCGAGTAGCTGGGATTACAGGCGCATACCACCATGCCCAGCTAACTTTGTATTGTTAATACAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCAACCTCAGGTGATACGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCATCTGGCCTTAGATGTCCTTTAAACTTACTTACACTGACATTGTTGTCCAAGATTTTACTGCTTGTTGTCAGAGCTGCTGCTTTCTTGCTTTTGGAGCTACTTTTCTTTGATGAGGCCTTATAGTATATATGGGTGGGTGTTCTGCTCTGGTCTTTCAGAAGGGGACCATTTATCTCTAGAGTCAGTGATGCTTTAGCTTAGCTGGGGCCTCCACTGACATCAATCCAGGGGGACCCCTTGGCAGGGTACCCCATACATAACACATGTGGAAGTACATCCTGCCTGTAGTTTAATACCAGTTCTCGACTGAAAAAAATACATAGGAATAGAACTTAATTTTTCTTTTTATAAAAGGAGAGAAATGTTTTCTTCCACCATGTTGAAGTTTGTATAGTGTAACAGATATTATTTTTCCAAAGTAAATCAAGGTAAATATCTTGTGGTTCTTCATGCCTGTGGTAACAGATTTAATATAAATGCAATAGACTGAAAAATAACCAGATTGCAAATCATATTTTTTTAATCAAACCCATGTAAAGGCTTCTGGTTCACATTTCAAGGGTAAGTTCGGGCCGGGTGCAGTGGCTCATGCGTGTAATCCCAGCACTTTCGGAGGCCAAGGCAGGTGGATCACCTGAGGTCAAGAGTTCAAGACCAGCCTGGCCAACATGGTGAAATCCCATGTCTACTAAATTAGGCAGGAGCGGTGGTGCCTGCCTGTAATCCCAGCTACACGGGAGGCTGAGGCAACAGAATCGCTTGAACTGGGAGGCGGAGGTTGCAGTGAGCAGAGATTGCACCACTGCACTCCAGCTTGGGCAGCAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAGGGAGGTGGTAAGTTCAGCTAAATTACATTTGTTAACTAAGTACTGTTATGCTGAAATCACCTTCATTTAAAAAGCAGAAACAAATGCATACATCCTCTCCAATGCACCCCATGCCTTCCCTGTTGTCTGTCCCCTTCTGAGGGCTCTATCAGCACCATGCATGAAAGATTTACCTGAGGCAGGTGAGAAAGTAGCCTAAATGCAGGATTCAGCTAAACCTACTATTCAGACTACATGGCAAAAACATTCCAGAATCCTAAGCATAAGGTACCAGCTTACAAAGTGACGTGCTACATTCTCACGCCTTTGACACTATTTTTAGTGACTCCAGACACATTTACCACCACTAGTTTTACCCATGAAAAGCCATTTCTAGCATCTATTATGCTAATTGACAAAGCCTGGGTGCCAGTCAGAGCTAAAGTCAGCAGAAGGCTTGGCATGGCCACCTCTAGAGTGTGGCCTTTTTTAGGCAGGGTCCTGGTGTGTCACGCAGGCTGGAGTGCAGCGGCACCATCAGGGCTCACTGCAAGCCTCAGGTGATCCTCCCACCTCAGCCTCCCGAGTAGCTGGGCCTACAGGCATGTGCCACCTAATTTTTGTATTTTTTGTAGAGATAAGGTTTCACCGTGTTGCTCAGGCTGATCTCGAACTCCTGAGCTCAAGTGATCCGCCTGCCTCAGCCTCCCGAAGTGCTGGGATTACAGGCGCGAGCCACCATGCCCGGCTGAGCGGGGTTTCTATTACACTCTCTCAGGCACTCAAGAGCCACCACTGGTTCAAGATGAATTTTCAAACCGAAAGGAGTTTTTATAATATTATTAGCCACCTTTTGTGAGGTGCTTATACCTTGCTAAATGTAGGCTCTAATTTAATCCTCCTACCTCCCTGTGAGGTATATTATGACCCTTTGTAGATGAAGAAACTGCAGCCGAGTTGGGATGATTTGTCTTGGGCCACCCAGCTTCAAGCAGGAGAGACTAAAACAGGTGGCCCTACCCCCAGCCCATCCTGCCTCCCAACACAAGGCAGCAGCACAAACAAACACGCCCAGCACATACGTGTTCACAGTGCTCAGGGAGAGTCATGCCTCAGACCAGTGGCCACCAGAAAGATTCAACTAGGACTCAACACACAGAATGCCCTGCCCCCTTACAACCCTCTCTTTTCCAG
Seq C2 exon
GACTCTGAAGAACGGCAGCTTGAGGGCAATGACCCCTTGAGGACACTGTGAGGGCCTGGACGGGAGATGCCAGCCATCACTCACTGCCACCTGGGCCATCAACTGTGAATTCTCAGCACCAGTTGCCTTTTAGGAACGTAAAGTCCTTTAAGCACTCAGAAGCCATACCTCATCTCTCTGGCTGATCTGGGGGTTGTTTCTGTGGGTGAGAGATGTGTTGCTGTGCCCACCCAGTACAGCTTCCTCCTCTGACCCTTTGGCTCTTCTTCCTTTGTACTCTTCAGCTGGCACCTGCTCCATTCTGCCCTACATGATGGGTAACTGTGATCTTTCTTCCCTGTTAGATTGTAAGCCTCCGTCTTTGTATCCCAGCCCCTAGCCCAGTGCCTGACACAGGAACTGTGCACAATAAAGGTTTATGGAACAGAAACAAAGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011-STAB2:NM_017564:68
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)