MmuINT0153453 @ mm10
Intron Retention
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86841198-86843617:-
Coord C1 exon
chr10:86843501-86843617
Coord A exon
chr10:86841659-86843500
Coord C2 exon
chr10:86841198-86841658
Length
1842 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
CACTGCCTTCTTTCTTCCAGGAC
3' ss Score
11.4
Exon sequences
Seq C1 exon
TCAGAAGATGACATTGATGCCTTGGCCTTTGGCAAGCAGCAGCCTGAGAGTATCACAAACCCTTTGTATGAGACCTCAACGCCGGCAGCCCCCGAGCCCTCCTGTGACCCCTTCACC
Seq A exon
GTGAGTTTGCACTTCACTCTAGGCCAGGGTTCATCTGGGGTACAGAATGCCACCTTCTGGCAGAGATCAGTGGAGCTACCCCGTGGGAAGAGCACCTTTCTAGAATGTCTGACAGCAAGCCAAGAAGCCACTTTCCTGATCAGAATCCCCATCTTTTCGGGGAGATGGCAGAAGCCCCAAACCAGAGGCTGCCTTGCCTCTACCATATGGGGGGTGGGGAGGGGTGCTACTCACAGAAGTAAGCCTGCAGAAAGTTGTTCCCTTAGCTATGCCCTCATCAACTCTGCCCGGGCAGAGCCACTTCTTGCTTGGGCAGTTGTCTTTGCTTGAGATCTTTAACAGGTGATGCTCGGATCTAGTCTTCCAAAGAGCCATTCATGTATTAAGTTGATGAGGCTTCAGGTTGGGAGCACCCTGACTTTAACCCGACGTAACCCTATGAAGGGCACCCCATTCACATTGAATGGGAAAGGTCATCTTTATAAGTTCTGGACTGACAAGCTAGGGAAAGGCATTTTCCCCTTACATAACCACGAAGAACCTTAACAACCAGTGTACTGGCTGTCCTTGTCTGACTAGCACACCACCCAGGTTGGCTGTTTTCTTTCAGCCGAGGCAACGTTGTAGTCTTGGCTTAGATGGACTAACAGCCCTTCTGGAGCAGTAACCAAAGCCAGATGGCTGCTGTCAGTGTGGTGTTTAGAACACATATTTCTCCTACAAATGATAGTATAGTTGTTTTTAAAATATGACTCTGAAAATCCCATTAAATATAGTATTTATTTACTAATCGAGACAAGGTCCTGCTCTGTAGCCTTGACGGGCCTGGAACTTACTATATAGAGCAGGTTTTCCAGAACTCAGAGACTCACCTTCTCTCAAGTGCTGGGATAAGTGGTGTGTGTCACCATAGCTGGCTGTGTAGTTCAATTTTTACAGGTTGTCACTAAAACACTACAAAGCTTTCTTACAAAACACTTTAAGACGCTTTACTGCAATAGCTGCAAACCCCGAGTCCACACCCTGTGGGGATTCGTATGTGTGGTAGCCAACAGAATTACCTTCACAGAAGGTTGAAAAATAAACACATCACGGCTTAACCTCCTTACCTCCCCATATTTTGCCTTAAGGGCACCTTCAGCTTTAAGCATGACAGAGTCACCCAAAGCAAAGGGACAGCATTTCTAGAGGCAGGATTCAGTTCAACTCAGTCAGAACCAGTGGCCCAAAGGCTCAAGTTCCAGGACTCCTGAGCCCAGGACACCAACAGGCTACACTCTCTGCCTTTTATACCTGCCCATCTCCGTACATCCCAAACAGAAACCTCTGCTAACCAATGCTGCTTGTCAACGCTAATGGCAGCACTCTGGCAGGGAGTAGGGTGTCCTGAGTTCAGCATCTCAAAGGCTTGCAGTCATCATGCTTCAGTATCTTCAGTATGAAGGAGTGTCTATAACTCTATTAATCACCAGTGGCTAAGTGTTAAATGGCCAACCCTCACACCTTCCTTGGGACCTAAGTATTCCTATAGTACTGATAGAGACAGGGAAGCAATATTGAGAAGCACACAGGCAACTTCAAGCAGCAAAACTTCAAGCATATATGGGCCCAGCATAAGCAGCCCTAGCCAGCACCTAACCCACCCCCACCGCCAGCTCTCACGTGAGGCAGCAGTATGAGGGAAGGCTCCAGTGACCACACATGCTTTAGGCCCACCCACCCCCTGTCTGAAGCAGCACCATGAGCAAAGGTTCAGTGAGGCCCCAGAGCAGAGCAGTGTTCTCCCTGGAGGGATGCAGGAGAGGCATCCTAACCCTAGCACCACTGCCTTCTTTCTTCCAG
Seq C2 exon
GACTCTGGAGAACGGGAGCTGGAGAACAGTGACCCTCTTGGGGCACTGAGGTCCTGATGTGAGAAGCCAGCCAACAGCCACAGCCACGTGAGCCCTGAGCCATCACGGTTACACGGTGACTCCCCTGCTCCAGCTGTCACTTGGATCATTTGTTTTAAAGTATGATAACTCAGAAGCCATACCTCACCCCTCTGGTTAGTCTGGGGTTGTCGTCATGGGTAAGGGGACATGTTTCCAGGACACCAGTATACCTCTGCCTCCTCTGGGCCTTCACTGTGGCTCTCTGCACCTTCCAGATGGTGCTTGGCCTGTTCTGCCCTATCTGTGGGTAGCTGTGACCCTGTGGTATCTCCTATTAACTGTAAGCACCAAAGGCAAGGCTTCATCCCATATGTTCTGTATTCCAGTACCCAGAAGTACCTGCCACACGGGTGCGCTCAATAAATGTGAGAACAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459:ENSMUST00000035288:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.641 A=NA C2=0.944
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATTGATGCCTTGGCCTT
R:
TGTCCTGGAAACATGTCCCCT
Band lengths:
351-2193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types