MmuINT0153453 @ mm9
Intron Retention
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86303955-86306362:-
Coord C1 exon
chr10:86306246-86306362
Coord A exon
chr10:86304404-86306245
Coord C2 exon
chr10:86303955-86304403
Length
1842 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
CACTGCCTTCTTTCTTCCAGGAC
3' ss Score
11.4
Exon sequences
Seq C1 exon
TCAGAAGATGACATTGATGCCTTGGCCTTTGGCAAGCAGCAGCCTGAGAGTATCACAAACCCTTTGTATGAGACCTCAACGCCGGCAGCCCCCGAGCCCTCCTGTGACCCCTTCACC
Seq A exon
GTGAGTTTGCACTTCACTCTAGGCCAGGGTTCATCTGGGGTACAGAATGCCACCTTCTGGCAGAGATCAGTGGAGCTACCCCGTGGGAAGAGCACCTTTCTAGAATGTCTGACAGCAAGCCAAGAAGCCACTTTCCTGATCAGAATCCCCATCTTTTCGGGGAGATGGCAGAAGCCCCAAACCAGAGGCTGCCTTGCCTCTACCATATGGGGGGTGGGGAGGGGTGCTACTCACAGAAGTAAGCCTGCAGAAAGTTGTTCCCTTAGCTATGCCCTCATCAACTCTGCCCGGGCAGAGCCACTTCTTGCTTGGGCAGTTGTCTTTGCTTGAGATCTTTAACAGGTGATGCTCGGATCTAGTCTTCCAAAGAGCCATTCATGTATTAAGTTGATGAGGCTTCAGGTTGGGAGCACCCTGACTTTAACCCGACGTAACCCTATGAAGGGCACCCCATTCACATTGAATGGGAAAGGTCATCTTTATAAGTTCTGGACTGACAAGCTAGGGAAAGGCATTTTCCCCTTACATAACCACGAAGAACCTTAACAACCAGTGTACTGGCTGTCCTTGTCTGACTAGCACACCACCCAGGTTGGCTGTTTTCTTTCAGCCGAGGCAACGTTGTAGTCTTGGCTTAGATGGACTAACAGCCCTTCTGGAGCAGTAACCAAAGCCAGATGGCTGCTGTCAGTGTGGTGTTTAGAACACATATTTCTCCTACAAATGATAGTATAGTTGTTTTTAAAATATGACTCTGAAAATCCCATTAAATATAGTATTTATTTACTAATCGAGACAAGGTCCTGCTCTGTAGCCTTGACGGGCCTGGAACTTACTATATAGAGCAGGTTTTCCAGAACTCAGAGACTCACCTTCTCTCAAGTGCTGGGATAAGTGGTGTGTGTCACCATAGCTGGCTGTGTAGTTCAATTTTTACAGGTTGTCACTAAAACACTACAAAGCTTTCTTACAAAACACTTTAAGACGCTTTACTGCAATAGCTGCAAACCCCGAGTCCACACCCTGTGGGGATTCGTATGTGTGGTAGCCAACAGAATTACCTTCACAGAAGGTTGAAAAATAAACACATCACGGCTTAACCTCCTTACCTCCCCATATTTTGCCTTAAGGGCACCTTCAGCTTTAAGCATGACAGAGTCACCCAAAGCAAAGGGACAGCATTTCTAGAGGCAGGATTCAGTTCAACTCAGTCAGAACCAGTGGCCCAAAGGCTCAAGTTCCAGGACTCCTGAGCCCAGGACACCAACAGGCTACACTCTCTGCCTTTTATACCTGCCCATCTCCGTACATCCCAAACAGAAACCTCTGCTAACCAATGCTGCTTGTCAACGCTAATGGCAGCACTCTGGCAGGGAGTAGGGTGTCCTGAGTTCAGCATCTCAAAGGCTTGCAGTCATCATGCTTCAGTATCTTCAGTATGAAGGAGTGTCTATAACTCTATTAATCACCAGTGGCTAAGTGTTAAATGGCCAACCCTCACACCTTCCTTGGGACCTAAGTATTCCTATAGTACTGATAGAGACAGGGAAGCAATATTGAGAAGCACACAGGCAACTTCAAGCAGCAAAACTTCAAGCATATATGGGCCCAGCATAAGCAGCCCTAGCCAGCACCTAACCCACCCCCACCGCCAGCTCTCACGTGAGGCAGCAGTATGAGGGAAGGCTCCAGTGACCACACATGCTTTAGGCCCACCCACCCCCTGTCTGAAGCAGCACCATGAGCAAAGGTTCAGTGAGGCCCCAGAGCAGAGCAGTGTTCTCCCTGGAGGGATGCAGGAGAGGCATCCTAACCCTAGCACCACTGCCTTCTTTCTTCCAG
Seq C2 exon
GACTCTGGAGAACGGGAGCTGGAGAACAGTGACCCTCTTGGGGCACTGAGGTCCTGATGTGAGAAGCCAGCCAACAGCCACAGCCACGTGAGCCCTGAGCCATCACGGTTACACGGTGACTCCCCTGCTCCAGCTGTCACTTGGATCATTTGTTTTAAAGTATGATAACTCAGAAGCCATACCTCACCCCTCTGGTTAGTCTGGGGTTGTCGTCATGGGTAAGGGGACATGTTTCCAGGACACCAGTATACCTCTGCCTCCTCTGGGCCTTCACTGTGGCTCTCTGCACCTTCCAGATGGTGCTTGGCCTGTTCTGCCCTATCTGTGGGTAGCTGTGACCCTGTGGTATCTCCTATTAACTGTAAGCACCAAAGGCAAGGCTTCATCCCATATGTTCTGTATTCCAGTACCCAGAAGTACCTGCCACACGGGTGCGCTCAATAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-Stab2:NM_138673:68
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.641 A=NA C2=0.944
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATTGATGCCTTGGCCTT
R:
TGTCCTGGAAACATGTCCCCT
Band lengths:
351-2193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: