RnoINT0144399 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27369853-27371772:-
Coord C1 exon
chr7:27371656-27371772
Coord A exon
chr7:27369910-27371655
Coord C2 exon
chr7:27369853-27369909
Length
1746 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CACAGCCCTCTGCCTTCCAGGAC
3' ss Score
8.84
Exon sequences
Seq C1 exon
TCAGAAGAGGACATTGATGTCTTGGCTTTTGGCAAGCAGCAGCCCAAGAATATCGCAAACCCTCTGTATGAGACCTCAGCGCCGGCACCCCCAGAGTCCTCCTGTGACCCCTTCACA
Seq A exon
GTGAGTTTGCACTTCACGCTAGGGGTACGGAATGCTGCCTTCCAGCAAACATTAGGGGAGCTGCCCCGCGGCAAGAGCAGCCTTCTAGAGTGTGTCTCAGACAGCAAGCCTGGAAGCCACTTTTCTGTGCGGAATGCCCATCTTTCCGGAGACGGCACAAGCCTCAAACCAGAGGCTGCCTGTCCTCCACTGTATGGCGGGTGGGGGAGGGGGAGTAAGCCTGCAGAAAGTCCTATCCGTAGCCATGCCCTCATCTCTGCCTGGGCAGAGAGCGTCTTGCTTGGACAGTTGCCTTTGCTTAAGGTCTTTACCAGGTGATGTTCTGATCTGGTCTTCCGAAGAACCATTCATTCATTTACTGAGTTGGTGACGCTCCAGCTTGGACGGAGCACCCTGACTTCAACCCAGGGTAACCCTGTGGAGGGCACCCCAGTCACACTGAACGGGCCTGTCATTTTTTTTTTTTAATCAGTTCTGGACTGAGAAGCTAGGGAAAGGCATTCTGCCCCCTTATATAACCATGAGGAACTTTGACAACCGTGTGCTGACTGTCCTTGTCTGACCAGCACACCGGCCAGGCTGACAGTGTCCTTTCAGCAGTCTTGTCTTACATGGATTAGCAGCCCTCCTGCAAAACTAACCCAGGCCAGGGGCTGCTGTCGGTGTAGTGTTTAGAACACACATTTCTCCCACAAAGCAGAGTATAGTTAACACATATAAGAAAACGACTCTGAAAATCCCATTAGATCAAACACATATAGTAAGTATTTTATTTGCTTATTAAGACATGGTGCTGCTATGTAGCCTTGACTGGAACTCACTCTGTAGGGCAGGCTTTCCAAAGCTCAGAGAGTCACCTCCTTCTGCCTCTCAAGTGCTGGGATGAGAGGCGTGTGCGGCCATAGCTGACTGTAGAGTTGAATTTTTATTTCTCTTGGCACCACTCCATTGAAACTACTGTCACTTTAAGCATTTATGGGGCGTCAGGTTACGCTGTTCAGGGCAGTCCCATGTTTTGCCTTAAGGTCACCTTCAGCTTTATTCAAGGCACAGTCACCTGAAGCAAAGGGACAGCATTTTAGTGGCAGGATTCAGCTAAACCAGTCAGAACCAGTGGCCCAAAGGACACCAACAGGCTACACTTTTATACCTATCCATCTCTGTACATCCCAAACAATGAGAAATCTTTGCTGGCCAATGCTTCTTGTCGGAGGTAGTTAACAGCAGGAGACTTAACAAGGCTCTCTGGCAAGGAGTGGGGGTCCTGAGCTCACCATCTCAAAGGCTCACATTCACCAAGCGTCAGTATTTTCAGTATGAAGGAGTGTCTATAACCCTACTAATCACCACGGGCTAAATGTAGTAGCCAATCCTCACACCTTCCTTGAGAGGTAAGTATTCCTATGGTACTGATAGAGATGGGGAAGCAATATTGAGAAGCACGCAGGCAACCTCAAGCATGGATGGGTCCAGCCTAGGCAGCCCTAACCAGCCTAACCCCCAGCCCCAGCCTCCACTCCTGTCTGAGGCAGGCATGTGAGGGAAGGCTCCTGAGACAAAGCTTTAGGCCCACCCCTTCCCCCTCCCCCTCAACCTCTACCCCTATCCCCACCCCCCCACCTCGTATGAAGCAGCATCATGAGCAAAGGTTCAGTGAGGCCCCAGAGCGGAACAGTGTCCCAAGGAAGGAAGCAGCAGCAGGAACATCACTAACTGTAGTGTACCACACAGCCCTCTGCCTTCCAG
Seq C2 exon
GACCCTGGAGAACAGGATCTGGAGGACAGCGACCCTCTGGGGGCACTGCGGTCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:79
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.487 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]