GgaINT0112674 @ galGal3
Intron Retention
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56821064-56822089:-
Coord C1 exon
chr1:56821970-56822089
Coord A exon
chr1:56821100-56821969
Coord C2 exon
chr1:56821064-56821099
Length
870 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TTTTCCCTTCTGTTTTATAGGAT
3' ss Score
11.54
Exon sequences
Seq C1 exon
TCAAAAGATGACACTGATGTAACATCACTGGACAAGCCCCAGCCTTCAAATATCACCAACCCCTCATACGAAAGTTCTTCTGCACTGACTCCATCAGAACCCACTTACGATCTTTTCTCA
Seq A exon
GTAAGTGTTAATTTTTATTTGGGACACAACTAAGACCATGGGAAGAGGGGGTGATCTTAGAAAGAAAAAGATCCACTTGGGAAAAGTATTTGGAAAAATATTGTTAAAATTCCTGGCTTTTCTTTCTGAGCCCTGCCAGGAATGGAGTAGCCTCACTTGGAGCTAAAATGAGGTTATGGTCTATAGTTTTGCCTCAAGTAGGACAAGAAGTAATAGCCTTAAGTTGCTCCAGGGAAGGATCAGGTTGGATGTTAGGAAACATTTCTTCTCAGGAATAGTGGTGCTGCAGTGGCACAGGCTGCCCAGGGAGGTGGTGGAGTCACCATCCCTGGAGGTGTTCCAGAACCGTGTGGATGTGGCACTGAGGGATGTGGTTGAGTTGAGTCAATATGATCATGGAGGTCTTTTCCAGCCCCAGTGATTCTACAATTCTAAGTATTGACTAGTGAGGCTGCAGCTGCTTTCAAAGAGAGCCAAACTAAATTGGACTTCAAATGGTGCTGTGACACGTCTAAACAAACTTATAAGCCTTTCAGTTTTGTCTTCCCTTCTCTTTGCTGCAAATGCAGCTGAGTGCCATGCTAGCACTCTGTACAGTGTCTGAGATGCAGTGAGAGGGGGGTGGAAAACAAGAGAAGGAAAATCCGGGTAAGACTGAAGCATCTGGATAGGCTCAATGGCCCAATTTAGCAAGACTCTCATGTACACACAGCAACTAAAGAGCAGAGTAGTCTTTCTGCATGCAGTAAAGAGACTTATTCAGTGCAAAAACGGCACTTGCAAACTTCCATCTATGTGGATAAATTTTCCAAAAATGTGAGCTTCATATGCATGATGTTCGTCTGATTTGTTTTCCCTTCTGTTTTATAG
Seq C2 exon
GATTCAGATGACCAGCAGCTTGTGATGAGTGGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751:ENSGALT00000020806:69
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]