BtaINT0144992 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37286105-37288633:-
Coord C1 exon
chr2:37288467-37288633
Coord A exon
chr2:37286713-37288466
Coord C2 exon
chr2:37286105-37286712
Length
1754 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
GGGGCCCTGTTCCTTTGCAGGAA
3' ss Score
9.88
Exon sequences
Seq C1 exon
AGCAGAAAATTCCTGAAGAAGAATACATTATTTTGATAGATGGCTTAAATGAAGCTGAGTTTCATAAACCTGATTATGGAGATACGCTTTCTTCCTTTATTACCAAGATTATTTCTAAATTCCCTGCTTGGTTGAAGTTGATTGTGACTGTAAGAGCCAATTTCCAG
Seq A exon
GTAAAAAAAGAATTCTCAAATCTCTTTCCAAGACCTTATGCCCCAATTTTGAAATTTTTATCATTATAATTTTAGGTTAACATTAACAACCTAAACTGTTGTAAATCATTTAGCTGCTGAATTGAAAAGTGTATTAGAACTTTGAAATATTAGTGTACAGGGCCCTAAACAGGCAAAGCTCTAACCTTTTTACCCTCAAGGCACATTGGTCAAGGTGTCAGGTAAGTTCCCTACTTTCATTAAGCTACATTGGTGCTTCCAAAACGGAAGTGTCTCGCCCCAGTTCTTCGCAACGCAGTTTGCGGGGCTGTTTTAGGTGCCTGGCCAATAAGCCTACTAGGATTTCAAGTTATTCTTGCTGGTAGTTATTTGTATGGGTTTGCAGTGAATTTTTTTCTTTTTTTCAATGAAGAGATAAGGGAGAGATAAAGGAGGAAGATTTTTAAAGCCAATTCTGAAAAAAAGGTCCAGTTTTTCCTAAAACTTAAACGTGAGATAACACTTGCAGCAAAATGAAGAGTGTATGTGTTTTTCTATTCCTCAGCTGTCCCCTCATTTGAACTCTGTAATTACATCTTAACAACCATTGACTCCTTACATCTACCCCTATCCATTTTTAGTAATGATGCAAGACATGGATTTTTATTTTTTTCCCTTTTTGGATGATATTTATTTAAAAATAGCATTTGGGTCCTTCTTTTCCCCTTTAAAAGTAGAATTGGACCTCATTTGCACTTGCGTTTGTTTTTATAGACCTCTGATCATACACTTTTCAGTCACTTTTCACAGTGAGCAGAGTGTGGCAGTCAGCAGCACGGGAGCAGGAATCCTGTGCTCTACATTCGAGCTGTGTTGAGTTTTCAGAGGCTCAGTTAGCATCATTGTGGGGTGACAGTCCTCAGCCTGCCTCCTACAGCTGTCACATTCAGTGAGGACATGCTACAGAAATGATGGTGGGACGTTTAAACAAAAAAAAAGACAAAATTCACCTCTACTGTTAAGTGTCATCCCACAGGTGCTTACCCTGTGGGATGGCAAAGGGACGGGGTGTCTGGAGCTGGTAATACTCTGTGTCTCCCGGCTGGTCCCACAGGTGTATTGGGCTTTGCGAAAGTGAATGACACAATGAAATTAGGATTTGTGCACCTCTGTATGTCACACTTCAATTTAAAAGTTTACAAAAGAAAAAAAAAAAAAAACTAACAACAACAAAAAAATAGTGGGCTGTATGCACGTCTGACAGCTTCATTACAGCAGTCTGCGGGGCCCAGCCTGGGGGCGGTTTCAGATGCCCTGGCTGGGAATCTTGACGCACAGTGAAGAATGCCTCTGATCCCAGTGTTTGGCCATGGCCTTAGATGCACAGTGGTGGTGGGTGTCTGTGCTTGTTGAATCACCAGTTGCACAGTGTAAAGATTATGGGTATATCAGGTCACCTGGGGTCTCAGTGCCCCATTGCTGGTGCAGCCAGGTTGTCACTGTCAGCTCAAGGCTCTTCCATCTCACTTGGCTCTGCATCCTCAGATAAGGGCCTCAGGAAAGCCTTTTCTGATTTAATCTTGCATCAGGCATTTCTTTCACATAAGCTTTTTATCTTCAATTTATCCTATTACATGTTTTAAGATAAAACAATGAGTCCCTGTAATCCATGAAAATCCTCCTTGAAAGAAAATTCGGGGATCTGGTTTGAAGTGCAGCTGACATGAAAAAGAAATCTCCGTGGAGTGACACTGTGGGGCCCTGTTCCTTTGCAG
Seq C2 exon
GAAATTGTCAGCGAGCTGCCATTTGTCAAGCTGTCCTTGGATGACTTTCCAGACAATAAGGACATCCACAGCGACCTGCACGCCTACGTCCAGCACAGGGTCCACAGCAGCCAGGACATCCTCAGCAACATCTCCCTGAACGGCAAGGCTGATGCTGCCCTCATCGGCAAAGTGAGCAGCCACTTGGTTCTGCGGAGCCTTGGCTCCTACCTGTACCTCAAGCTCACCTTGGACCTCTTCCAAAGGGGACACCTGGTCATCAAGAGTGCCAGCTACAAGGTGGTGCCTGTGTCTCTGTCTGAGCTCTACCTGCTGCAGTGCAACATGAAGTTCATGACCCAGTCTGCTTTTGAGAGAGCACTTCCCATTTTAAATGTGGCCCTGGCGTCCCTCCACCCCATGACGGATGAGCAGATCTTTCAGGCGATCAACGCCGGCCACGTCCAAGGGGAGCAGGGCTGGGAGGACTTCCAGCAGAGGATGGATGCCCTCTCCTGCTTCCTCATCAAGCGTCGAGACAAAACCCGCATGTTCTGCCACCCATCCTTCAGGGAGTGGCTCGTGTGGAGAGCAGATGGCGAGAACACAGCCTTCCTGTGTGAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177:ENSBTAT00000005473:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGCTTGGTTGAAGTTGA
R:
TCAGACAGAGACACAGGCACC
Band lengths:
349-2103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]