RnoINT0147512 @ rn6
Intron Retention
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45870133-45872384:+
Coord C1 exon
chr3:45870133-45870299
Coord A exon
chr3:45870300-45871776
Coord C2 exon
chr3:45871777-45872384
Length
1477 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
TTTTTTTTTTTCTCTCTCAGGAA
3' ss Score
12.55
Exon sequences
Seq C1 exon
AGCAGAAAATTCCAGAAGAGGAATACATCATCTTGATAGATGGCTTGAATGAAGCCGAATTTCATAAGCCTGATTACGGGGACACGCTGTCTTCATTCATTACCAAAATCATTCCTAAGTTCCCCCCCTGGCTGAAGTTGATCGTGACCGTGAGAGCAGATTTTCAG
Seq A exon
GTGACAAATACCCCCCATCCCCCGCTCTCTTTCCAAGTTCCCACACCCCACATATACAGAGGCAAGTGCTCCTGGGCTAGTGTTAGAGCCCGTTTGGCTACTGAATTGAAAACCATTATTGGGACTTTGAAAAAAGTGGTTCAGAGAGTCCCATAGGAACAAGAATCGTCACAGTGTCAGCTGAGCAGCCTACTGTCAGTGAAATGGCAGCTGGCTTCTGTAGTGAGGTGTGAACGGGCTGAGATTTCCGACTGAGGTTTCCGGTCAAGCAAAGTACTGGAGCTTCTGGGTTTGGGAGCCATTTGTTATGGGCATGACTTGTTTCATTTCGTGGAGCTGGGTAATCGTGTTCATGATTTTTCCTTACTAAAACCCGCAACTAAACCTACATTTAAATGGCAGCCCACGCTTCTCTCTATGACCTTTGGGGTCATACATTTTCAGTCAGGTCTCCCACACTAAGCACAATCTAGCAGCTGGGTTAAAACTTGGAACTGGTTCCTGTATCCCTGTGCTGGCTTGTTGCTAAGATCAGTTTCCGCGCAGCACGGGAGCGGCCGTCCACTACCCTCTTCCTGCCATTACTACCTTAAAAAAACGGCGTGGGCTTCAGAAGAGTTCGTGAGAAGTTAAATCGTTTCTTGGGGCTAGGACCTTGTCTTGGGAATAAAGGAGCAGGAACGTCAGTGACCCTGTGCACTTCAGATTCAGCCAAGGAGAGATGGGTCGGCGATTAAGAACGTGGGCTGCTCTTTTGTACAACTTGGGTTTGCTTCCTGGCACCCATACGGTGGCTCACAACCACCAGAGCTCTACCTCCCTGGTCCGACACCCTCGTCATGGGTACCAGGCATGCACTTGGTGCACAGACATGCAGACAAAACAAAATACTTTTTTCGAAAAGAATACTTAAAATTCTTTTAAACTGAGAACGTGCTATAGCAGAGCAGGAAGTGATTCCTGCTGCTCGTGGTCTGGGGACACAGGCCGAGCGGGAAGTCTCCTGTTCCCTGGCAGGGTTACACAGCCCTGGTATCTGATGCGGAGAGGGCACGTCTTACCTCAGGGTCTGGCTGCCTTCTTAGACGCGCCGTGTTGGTTCGTGTTTACCCTGGTTCTAGAACCAGCCGCTCAGGGATTATGGGTATCGGGTCACCTGCAGGGTCTCTCTGCCCCTTCTGTTGGTGTGGCCTGGCTGCTGCTGCTGCTGCTGCTGCCTCCTGGGGCCCCTCCCTCTGCTCCCTTGGCCCAGAGTCCTTAGTGGGGGCTTTGGGAGAGATCCTATCTCCCCTCAGGATTTCTTTCACTTAAGCTTTTTATCAGTACCTCATCCTATTACATGTTTGAATACAAAACAGCGAGTCCCTGTAATCCACGGAAATCCTCCTTGAAAGGGGCCGGGCGAGCCTGGTTTAAAGTGGGAGGGAATCTCTTTGGGGGCTAACACCGGGATTGCGTTTTTTTTTTTCTCTCTCAG
Seq C2 exon
GAAATCATCAGCACGCTGCCTTTTGTCAAGCTTTCCTTAGACGACTTCCCAGGCAACCAGGACATCCACAGCGACCTGCACGCATACGTCCAGCACAGGGTCCACAGCAGTCAGGACATCCTCAGCAACATCTCCCTGAACGGCAAGGCCGACGCCGCCCTCATCGGCAAAGTCAGCAGCCACCTGGTGCTGCGGAGCCTTGGCTCCTACCTGTACCTCAAGCTCACGCTGGACCTCTTCCAGCGGGGCCACCTGGTCATAAAGAGCGCCAGCTACAAGGTGGTGCCTGTGTCTCTGTCTGAGCTCTATTTGCTGCAGTGCAACATGAAGTTCATGACCCAGTCTGCCTTCGACCGAGCCCTTCCCATTTTGAACGTGGCCCTCGCGTCCCTCCACCCCATGACGGATGAGCAGATATTCCAGGCGATCAACGCCGGCCACATCCAAGGCGAGCAGGGCTGGGAGGACTTTCAGCAGAGGATGGAGGCCCTCTCTTGCTTCCTCATTAAGAGGAGAGACAAAACCCGGATGTTCTGCCACCCGTCCTTCAGAGAGTGGCTGGTGTGGAGAGCGGATGGCGAAAGCACAGCCTTCCTGTGTGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394:ENSRNOT00000038983:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGACACGCTGTCTTCATTC
R:
GCTCTTTATGACCAGGTGGCC
Band lengths:
357-1834
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]