MmuINT0156835 @ mm9
Intron Retention
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59635643-59638235:+
Coord C1 exon
chr2:59635643-59635809
Coord A exon
chr2:59635810-59637627
Coord C2 exon
chr2:59637628-59638235
Length
1818 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
GTTTCCCGCCCCCCCCCTAGGAA
3' ss Score
10.65
Exon sequences
Seq C1 exon
AGCAAAAAATTCCAGAAGAGGAGTATATCATCCTTATAGATGGCTTGAATGAAGCTGAGTTTCATAAGCCTGATTACGGAGATACGCTGTCTTCGTTTATTACCAAAATTATTCCTAAGTTCCCCACCTGGCTGAAGTTGATCGTGACCGTGAGAGCAAATTTTCAG
Seq A exon
GTGACAAAATACTTCCCCCCTTCTCTTTCCAAGTTCCCACATCCGAAGTATCCAGCGGCAAGCGCTTTTGGCCTAGAGTTAAAGTCCGTTTGGCTACTGAATTGAAAACCAATATCGAGACTTTGAAAAAGTAGTCCAGAGAGTCCCGTAGGGACAAGGACGGTCACAGTGTCAGCTAAGCATCCTAGCAGCATTGAGCTGTCCCTGTCCTTCTGAAATGACAGTGTGTAAGCCTGGCTTACTGTAGTGAGGTGTGCGCTGGCCGAGGTTTCTGGCCAAGCAATCTACTGGAGCTTCTAGGTGTGGGGACAGCTTGTTATAGCTATGACTTGTTTCATTTCATGGAACTGGGTGGTCATGCTCATTTTTTTTTTCTTATTAAAACTTGTGATTATCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTTACCCACCCCCCACCCCACCCCCGGCTTGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTCAGCCATCAGTGGAAAGAGAGGCCCATTGGTGGTGCAAACTTTATATGCCTCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGTGGGGAGGGGAGGGGAGGGTATAGGGGGCTTTTGGGATAGCACTGGAAATGTAAATGAAGAAAATACCTAATTTAAAAAAAAAAAACAAAACTTGCGATTAAACCTTACATTTAAATGGCACGCTTATTTTTATGACCCTTTGGGTCATCCATTTTCAGTCGTATTTCCCTCATTAAGCATAACCTAGCAGCTGGGCTAAAACTTGAACTGGTTCCTGTATCCCTCTGCTGTAGTGCTAAGGTTAGCTTCCGTGCAAAATGGAAGCGGCTGCTCACTACCGTTTGTTTTCCTGCCATTACTACCTTCAAGGGCATGGGCTTCAGAAATGTTAGTGAGAAGTTAAATTGTTTCTTGGGGTTAGGACCTTATCTGGGATGACCCTCACGTCCGTGACCCTGTGCAAGTCAGAGTCAACCAACAGTTTGCTTGGGGCTGGAGAGATGGCTTGGTGATGAAGAACATGGGCTGCTCTTTTGTAGTACTTGGGTTCAATTTCTAGCACCCGTATGGCGGCTCACAACCACCGTAACTCTACTTCCCTGGCATCCAACACCCTTGTCGTGGGTACCAGGCATGCATTTGGGACACAGACATGCAGACAAAACAAAATAATTTGTTTTAAAAAGAATGCTTAAAATTCTTTTAAGATGAGAACATGCCGTACTGGAGCAGGCAGTGATTTTTGCTGCCTGGTGTCCGGGGACACCGGGGGAACGGGAAGTCTCCTGTTTCCTGGTAGGGTTACACAGCCCTGGTGTCTGGCGCAGAGAGGGCACTTCTTGTCTCAGTGTCTGGCTGTGCTCTTAGATGTGCAGTGACGGTTTGTGTCTACCCTTGTTCTGGAACCAGCTGCTCAGGGGTTATGGGCATCGGGTCACCTGCAGGGTCTCGCTGCCCCTTTGTTGGTGTGGCCTGGTTGCTGCTGTCTCCTTGGGCCCCTTTCCCTTGCTCACTTGGCTCAGAGTCCTCAGGGGGGGCTTTGGGGGAGATCCTATCTCGCATCGGGATTTCTTTCACTTAAGCTTTTTATCTGTACCTCATCCTGTTACATGTTTTAATACAAAACAGCGAGTCCCCGTAATCCATGAAAATCCTCCTTGAAAGGGAACGAGCGAGCCTGCTTTAAAGGGAAAGGGGAAACTCTGCGGACTAACACTGCGAGGTTTTGTTTCCCGCCCCCCCCCTAG
Seq C2 exon
GAAATCATCAGTGCACTGCCATTTGTCAAGCTTTCCCTAGACGACTTTCCAGACAACAAGGACATTCACAGTGACCTGCACGCCTACGTCCAGCACAGGGTCCACAGCAGCCAGGACATCCTCAGCAACATCTCCCTGAATGGCAAGGCCGACGCCGCCCTCATCAGCAAAGTCAGCAGCCATCTGGTGCTGCGGAGCCTCGGTTCCTACCTGTACCTCAAGCTCACGCTGGACCTCTTCCAGCGGGGCCACCTGGTCATAAAGAGTGCCAGCTACAAGGTGGTGCCTGTGTCTCTGTCCGAGCTCTATCTGCTGCAGTGTAACATGAAGTTCATGACCCAGTCTGCCTTTGACCGGGCCCTTCCCATTTTGAACGTGGCTCTTGCGTCCCTCCACCCCATGACGGATGAGCAGATATTTCAGGCTATCAACGCCGGCCACATCCAAGGCGAGCAGGGCTGGGAGGACTTCCAGCAGAGGATGGAGGCCCTCTCTTGCTTCCTCATTAAGAGGAGGGACAAAACCCGCATGTTCTGCCACCCGTCCTTCAGAGAGTGGCTGGTGTGGAGAGCGGATGGCGAAAGCACAGCCTTCCTGTGTGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-Tanc1:NM_198294:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGTTGATCGTGACCGT
R:
CACTGCAGCAGATAGAGCTCG
Band lengths:
357-2175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: