HsaINT0163604 @ hg38
Intron Retention
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:159176352-159179163:+
Coord C1 exon
chr2:159176352-159176518
Coord A exon
chr2:159176519-159178555
Coord C2 exon
chr2:159178556-159179163
Length
2037 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
GTTTTTGTTTTCTCCCCCAGGAA
3' ss Score
12.39
Exon sequences
Seq C1 exon
AGCAGAAAATTCCTGAAGAAGAATACATTATTTTGATAGATGGCTTAAATGAAGCTGAGTTTCATAAACCTGATTATGGAGATACGCTTTCTTCATTTATTACCAAAATTATTTCTAAATTTCCTGCCTGGTTGAAGTTGATTGTGACTGTAAGAGCAAATTTTCAG
Seq A exon
GTAACAAAGAATTCTCAAATCTTTCTCCAAGTCCCCATTCCAATTTTACAGTGATAAATGTTAATAACGTAAAACTGTTGTAAACCATTCAGCTGCTTGAATTGGAAACTATGTTAAGAATTTGAAAAACTAGTCCAGAGAGCCAGACTTGGGTGAAACTCTGACCTTTTTAGCCCCAGGTATATTTATCAAGATGTCAGGTAAGTTTCCTGTTGGCATCGAATTGCACGTTCACTTTTCAAATGGTGGCATCTAGCCCTGGTTACCGTCATGGAGTGTGTGGGGCCAAGAGGCCTGCCAGAGTTTAAAGCTACTCCTGCTGGTAGTTATTTGCAAGGGTTTACTGTGGGGCTTTGTGTTTTTTTGAAGGGAAAAATGAAGGTGAAAGATTTTTTTTTTTTTTTTTTTTGAGATAGAGTCTCGCTCTGTCACCCAGGATGGAGTGCAGTGGCATGATCTCGGCTCAATGCAGCCTCCGCCTCCCTGGTTCCAGTGATTCTCCTGCCTTGGCCTCCGGAGTAGCTGGGATTACAGGCATCTGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGATTTTCACCATGTTGGCCAGGCTGGTCTCCAACTCCTGACCTCAGGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGTGCCTGGCTGAAGGTGAAACATTTTTAAGGCCTATTCCCAGAGGTCTATTTTTTCACAAAACTTAAGCATGAGGTAACATTTGCAGCGAGGGGTAGGGTGATTTTTTTTTTCTCCTCCATCTTCTTCCTCACTTAAACCCTGAAATTGTGTCTTAACCATTGACTCCTTCTATACCTATCCTTTTTCAGTGAAGACTTTTAGACATTAGGTTTTGATTTTTGCCCTTTTATGATATTTATTTAAAAACAGCATTTGGAATTTTTTCATTATAAAAACTGAAATTAGACCTCAGTTGAACTTGATGCGTGTTTTTTGGACATTCAGTTTGTATATTTTTCAGTCATTTTTTACATAGTAAGCACAATTTGTCCATCAGTAGATCATAGGAACCAGGAATCTTACGTTCTTCTTCCCAGCTGTGTAAGTTTTCAGAGCTTCAGATAGCATCCATGTAAAATGGGAATAATTGTATTCTGCCCTCTTTATCTACATTGTTATATTAAATGAGCACGTGCATTTAAATACTTCAGAAACAATAGTGGGAAGTCTTTTTAAAAAGGCAAAACTCTTCTTTGCTTTTAGGTGTCAGATGTGCTTAATCTTTGGAATGGGGAAGAGATGGGAAGGGCACATGAGGCTTCTGGGAGCTGAGGATGTTTTGTTTCTGGGTGCTGGTTACATAGGTATATTTGACTTAGTGAAAATTAGTGACACTGTGCAATTGTCATTTGTACACAAATCATATGTTCATTGTTAGACTTCAATTTAAAAGTTTACTTTAAAAAAGCAATTCATAAAATAACGTGCTATACCAAAGTAGGCAGCTTTGTTAAGATGCGCTGTCGTTGAGACACAGCCCAGGGGCAGACTCAGATTTCCTGATTGGGTTACACAGCCCCAGTGTTTGCTGCATAAAGAAGGATGTCTTTTATCTTGGCGTCTGGCCGTGTTCTTAGATGTGCAGTGTTGGTTGGTGTTTGTCCTTGTTATATAAGCAGTTTCACAGTGTAAGGATTATGGGTATCAGGTCACCTGCAGAGTCTCACTGCCCTTACTGGCCCTGGCCTCGTTGCCGCTGTCTGCACAGGGCTCTTACTCTGCTTGCTAGGCTCAGGGTCCTTGGATGAGGGCCTCAGGATAGCACTTACTGATTCCATCTCCCATCAGGATTTCTTTCACATAAGCTTTTTATCTTCACCTTATCCTATTACACGTTTTAATACAAAACAATGAGTCCCTGTAATCCATGAAAATCCTCCTTGAAACAAAACTAGTGAATCTGGTTTAAAATGCTGTTAAAATAAAAAAGGAATCTCTTTAGAGTGACACTGTGGGTTTTTGTTTTCTCCCCCAG
Seq C2 exon
GAAATCATAAGTGCGCTGCCATTTGTCAAGCTTTCCTTAGATGACTTCCCAGACAACAAAGACATCCACAGTGACCTGCACGCCTACGTCCAGCACAGGGTGCACAGCAGCCAGGACATCCTCAGCAACATCTCCCTGAATGGCAAGGCCGATGCCACACTCATTGGAAAAGTGAGCAGCCACCTGGTGCTGCGGAGCCTCGGCTCCTACCTGTACCTCAAGCTCACCCTGGACCTTTTCCAGAGGGGCCACTTGGTCATTAAGAGTGCCAGCTACAAGGTGGTGCCCGTGTCTCTCTCTGAGCTCTATTTGCTTCAGTGCAACATGAAGTTCATGACCCAGTCCGCCTTTGAGAGGGCACTTCCGATTCTCAACGTGGCCCTCGCATCCCTCCACCCCATGACAGACGAGCAGATCTTTCAGGCTATTAATGCTGGCCACATCCAGGGGGAGCAGGGATGGGAAGACTTTCAGCAGAGGATGGACGCCCTCTCCTGCTTCCTCATTAAGAGGCGAGACAAAACCCGCATGTTCTGCCACCCGTCCTTCAGGGAGTGGCTTGTATGGAGAGCAGACGGGGAAAACACGGCCTTCCTGTGTGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183:ENST00000263635:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains