GgaINT0046910 @ galGal3
Intron Retention
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38146526-38148742:+
Coord C1 exon
chr7:38146526-38146692
Coord A exon
chr7:38146693-38148134
Coord C2 exon
chr7:38148135-38148742
Length
1442 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTTTGTTCTTTCTTCCTCAGGAG
3' ss Score
11.22
Exon sequences
Seq C1 exon
AGCAGAAAATTCCCGAGGAAGAATACATAATTTTGATCGATGGTCTAAATGATGCTGAATTCCATAAACCTGATTATGGTGACACAATTTCGTCATTTCTTGCAAAGATAATTTGTAAGTTTCCTCCCTGGCTGAAGCTCATTGTGACTGTGAGAACTAATTTCCAG
Seq A exon
GTAAAAAAACAAAACCCTTTGACCTTCATAGTGATGTAACTGCATTGTTAAGAAAAACACAGGTTTTAGAGGAGCTCAAAGTCAAGTCTTTGGGGTTGGTTTGTTATTGTTTTGTTGTTTTTTTTTTTCTTCTCCTTTGTTGTTGCATATTTCTTTATAGCAGAAGTACGATAGTGGAGGAGTGTTTGTTCTGTTTCAAATCTCCTTCTTAAGTTGAATTGATAATATAAGAAGTGGGGAAATTGGAATATGTTTCTTTGTCTTTCTGGAGGGAAATGAACAAATGAATGAAGGAAAAATTTAGTAATAATAATTAGAAGCACATAGTGGTCTTATCTTAAAAGTTTAGGTGCTGGAGTATAAATCTGCTATTACTCTGTATTGTCACATTTTAGGAAGGGATGAGTTGCAATTCCACTGTCACGGTTGATGCAATTGATTCCTAGACTTTGTACCATCGGTCTCTGTATTGCTTCATCCATTTGTTCCCTCTGAACAAATAACTCCAAAGTTAGAGCATCTTGTCAGAATTAAGCAGCTGAAAGATACTTGAAATAGTCTTTAGAAAGTTTGAGACCATATAGACTTTTTTCCTTGCACTGCACAGCAATGTTCTGTTGGAAGTTATGTTCTTGGTGGCTTTTTTTCAGCACTACTCCTGTTCTAAGATCTTCATTGTTTTTTTTTCACTTCAGTTTAATAATAACACTTCTAAAAGTATGTCATCTTAATTGCCCTTCACCTTCTTCCTTAGATAGCAGCCTTTATATTTTTACAGTGCTTGAGATACAGCCCTACCATCCCCATGCTACCACTCAACTAGGCATCCCACATTTGCAAAGAAGAAAACATGAAGGAGGACTGAAGTCCAGCTCCATGCTATGTATTTCCTAACACAACAGAGAGTATGTCTAGGCAGAAGTAGGCCATAAAAATGTGTTCAGGTAGACATGTTGAAGTGTATACTTGATACTTGCCTTAAAATAAATAGGGCTGTATATGTGCAGTAAGTACCTTTCTGGTATGTTATTACTAGACAATGGGACAATGAGAATATTCTTTTCTTCTCTCATCATTAGATCTGTTCTTTAATAGATAATTCCTTCCACCTCCTGCCTTCCCCTTGTTACCAGTTCTGGTAACTTTTTTGTTCCCTTAGTTCTGAAGTGATCATTTGTATAAGAGATGAGCTATACAGCCTTGCAGAGATTGGTCAGTAAAACATTTGAGAACATCCTATGCAAAATGACAGAATGCAGAAATACTGTTTTACCTCTTATTAGTTGTCAGCATTTGCAAAACGACAGTAGTGATAGTAAATTTGGTTTCAGTCTATCACATACTTGTTACAGAAGACATCTATAGCAAAGACACGTTGCTGAGTACGTAGTGTTCAGTCGTGAAATGCTATATTGCCTGTGTTTTTGTTCTTTCTTCCTCAG
Seq C2 exon
GAGGTAGCAAGGTCACTACCCTTTATCTCAATATCCCTGGACGATTTTCCAGACAACAAAGAAATTCACAATGACTTGAGTGCTTACATTCAGTACAGAATTAATAACAGTCAGGAGATTATAAACAACATATCTTTAAATGGAAAAGCTGATGCGGCTATAATTGGGAAAGTGAGTAACCATCTGATCATGAGAAGCCTGGGATCTTATCTCTATTTGAAACTGACTCTGGATCTTTTCCAAAAAGGTCATTTAGTAATCAAAAGTGCAAGCTACAAGGTAGTTCCAGTGTCTCTATCAGAACTGTACTTACTTCAGTGCAACATGAAGTTTATGACAAACTCTGCGTTTGAGCGAGCCCTGCCAATATTAAATGTGGCTCTGGCATCCTTACATCCCATGACAGATGAGCAGATTTTCCAAGCTATTAATGCAGGTCAAATAAATGGAGAACAACAATGGGAGGACTTCAGCCAAAGGATGGAAGCTCTTTCATGTTTTCTGATAAAAAGGCGTGACAAAACACGTATGTTCTGCCACCCTTCCTTCAGAGAATGGCTTGTTTGGAGAGCAGATGGTGAAAATACTGACTTCTTATGTGAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570:ENSGALT00000020527:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAGTTTCCTCCCTGGCTGA
R:
TGGAACTACCTTGTAGCTTGCAC
Band lengths:
342-1784
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]