BtaINT0145010 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37315158-37316498:-
Coord C1 exon
chr2:37316368-37316498
Coord A exon
chr2:37315345-37316367
Coord C2 exon
chr2:37315158-37315344
Length
1023 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TCCTTCCGTTCGTCTTGCAGTGC
3' ss Score
11.25
Exon sequences
Seq C1 exon
AAGCAAAGGCCGATAATGAACCGAGCTGTTCGCCGGCAGCTCAAGAACTGTTGACAAGACTGGGATTTTTACTGGGAGAAGGGATCCCAAGTGCCACACACATAACCATTGAAGAAAAAAATGAAACCATG
Seq A exon
GTAATGCCCGAGGAAGATACTGCATGTCATATCTGCTCGGAGGATGAATGACGGCATAATCGTCTTGCCTCCTCCCTGAGTAGGGAAGTTGTTGTTCAGACCAGATGAGTCTGGGCCATTGTGTATTGAAATTAAATTTCAACAGTTTGTTTGTGAACCTTTGTAGTAGGGAGTGGGGAGAAGCAGAGGGTGCAGACCTTACAAAAATGTCCACATTAACCTTCTGGTCACCACCCAGAGAAGAGTAACTGAATTGAAGTGGCCGAGAGAATTCCTTAGGAATGATACTACTTTTATCTTTATAGCACCATTCTTTTCATCCGGCTGCTTTGGTATGCACTTTCCTGTGCTTTTTTTAATTGGTTTAGACTTTGGAGGGTCAGTGGGGTGAGGAAAAGATTTATAGAAGATGAGTGGAAACAAAATAAAATAAGATCAAAAGGTTCATCTTCGGAAGAGCACTCCCCTTCCTAGGGAACGGCAGCCTGCCACATCCGAGATGAGAAGTGTACTTCCGAATAGCAATGAGGGGCCGGAGCCTCTGCCCCTTCGAGGGTCTCTGCGAGGGTGTCAGGCGTGGATTGAGATCACAGTGGCCACCAGTCTCCTTCCCTGGATCGCAGAGCCCATAAATCTTCCAAAAATTGAATCAGGTTGTGGTGCTCGTGATACATTACAAAAACAGAGTTCCCAGATTTTCCACACAGAGGTCAAAGAACCCATTTGTCTTCTGCAGAGTTTAAATGAAAGGAAGTCTGCCTGTTTGCTGTTTCTGCTTTACAAATGTTCATTCCCACTAAATTATTTCCAAGACTGCCCTCTTAAGAAAAAAGATCACAGGGAGGCGAACAGAACTAAGGGAGATTTCTCTTTTTAAATTTTGGAAGACCGTATATATTAAGATCCCTGGATTGTAAAAAAGAAAACCTGTTTTCCATTTTCTTGTTTGTTTTTCATGCTAAAACCATGAAGCTACAAAAGGGTGTGTAGACGCGCTAACTCCTCCTTCCGTTCGTCTTGCAG
Seq C2 exon
TGCACAGCTCTGAGCCAAGGCATCAGCCCTTGCTCCACTCTTACGAGCAGCACCGCCTCTCCTAGCACCGATAGCCCCTGCTCAACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAACAAAAGTCCCTGTGAGACCATTAGCAGCCCTAGCTCCACCCTGGAAAGCAAGGACAGTGGAATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177:ENSBTAT00000005473:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.591 A=NA C2=0.619
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAAAGGCCGATAATGAACC
R:
CTATAATTCCACTGTCCTTGCTTTCC
Band lengths:
318-1341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]