MmuINT0156853 @ mm9
Intron Retention
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59609189-59610596:+
Coord C1 exon
chr2:59609189-59609319
Coord A exon
chr2:59609320-59610409
Coord C2 exon
chr2:59610410-59610596
Length
1090 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TCCCTCCCTTCCCCTTGCAGTGC
3' ss Score
12.99
Exon sequences
Seq C1 exon
AAGCGAAGGCTGATAATGAACCGAGCTGCTCTCCAGCAGCTCAAGAACTGTTGACAAGGCTGGGATTTCTACTGGGAGAGGGGATCCCGAGCGCCACACACATAACCATTGAAGACAAAAATGAAGCCATG
Seq A exon
GTAATGCCAGAGGAAGAAGCTGCATTTCCTACATGCTCAGCATGCACCCTACCGGCACGTGTGGGAGAGTGGGGCTCTCATTACTGTTTGGTCAAATGAGTTCTGGGCACTTGTGTTTTGAAATTTAATACAACAGTTAGTTTCTGGGTCTCAGCTGGGGATAGTGGTGGAAATTGTTAAGGACAAACAGAAGGGATCAGAACTTAAGAAAATGTCCATATTAACCTTACAGCCATGGCCCAGAGAATATCAGCTACATGTCGTCTTGTAATAAGGGTACTTCTGTCTTGAGAGCACCGTTACTCTCACGAACTGCTTTGGTCTGTGGTTTTCTGTGCTCTCTCAGCTGTTGGGATGGGGGGTGAGGGGGAAGTCAGTGGGGTGAAGAGAATATTGATAGGAGATGAGGTAGAGACAAAATGGGAGAGAATCAAATGTCTCACCCTTCAGGGAGACGCACTCCGTCTCAGGGAACCCAGCCACCAGGCTCCCGCCACCTGTGAATGTGCAAGTAGCAGTGCAAGGAGTTGGGACTTCTGCCTCCCTCCACCCAGGGTCTCTGTGAGGAGGCATGGCTGGGGCGGAGGGTGGCGGGGGAGGGCGTTGATGGAGACTGCAGTGGTCACCAGTCTCCTTTCCTGAACACACAGCTTATAAATCTTGAGGAATAAAGTCAGGCTGCCGTGCTTGTGAAACATTATAGAAACATGGTCCCCAGGTTTCCCCGCACAGAGGTCAAATAACCCATTTGTCTTCTTGAGGCTTTAAATGAAAGGAAGTCTGCCTGTTGGCCATCTCTGTTTTATGAATTTGTGTTCCCACTGAAGCATTGCTAAGACTGCCCTTTTAGTTGAAACCTCAAAGGAGGCAACCAGAACAAAGAAAGACACATCTCTTTTAAGCATTTTGGAAAATCGTGTCTGTCCCTATTTAGCTACAGAAGTTAAAAAAAAATGTCTCCGTTTGTCTTGTGTTTAAGTTTCATCATTTTGGCGTCCAAAACAAAAACATGTGTTGAAGCACACATACTGTGTAAGCCGTGTTAACCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTTCCCCTTGCAG
Seq C2 exon
TGCACAGCCCTGAGTCAAGGCATCAGCCCTTGTTCCACACTCACAAGCAGCACTGCCTCTCCCAGCACCGACAGCCCCTGCTCGACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAGCAAAAGTCCCTGCGAGACCATTAGCAGCCCCAGTTCCACCCTGGAAAGCAAGGACAGTGGAATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-Tanc1:NM_198294:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAAGGCTGATAATGAACCGA
R:
TTCCACTGTCCTTGCTTTCCA
Band lengths:
310-1400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: