GgaINT0046903 @ galGal3
Intron Retention
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38137689-38138899:+
Coord C1 exon
chr7:38137689-38137810
Coord A exon
chr7:38137811-38138709
Coord C2 exon
chr7:38138710-38138899
Length
899 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
CCTTTTTCTTCACATTGCAGTGT
3' ss Score
8.85
Exon sequences
Seq C1 exon
CAAAGCCTGATAAAGACTCAAGCTGTTCTCCTGCAGCACAAGAATTGATGACGAGATTGGGTTTTTTACTAGGAGAAGGGATACCAACATCTGCTCATATAGAAGAAAAAAATGAATCCATG
Seq A exon
GTAGGATTATTGAAAAAATGCATAATGTTCATTCTGTTTATCTTAGTGTTCTCATGTTATTTTCCCTATTTGCTATGTGCAGTTACTTGATTCTTCACCAAAATAGATTCTATTTTAATAGTCATATGGTAGTAGAATTTTAGCTGAATTTTAACAATCGACTTATAGATATTTGGTTTTGTGTGTTTTGTGGTTGTTTTTTATTTGTTTGTTTGTTTTAAATTGTGAGTTGATCTTGCATTCTTCCTCTCTCTGCCTTATTTTCTTCCTGGTTTTCTCAATGAGCTACAAGAAGGGAGTATCTCAGTGGTTTACTAAAGTAGGAGCATACTTTGGAAGTATTGTTTCCTCTCTAAGATATTCAGTTCCTGTTTTATGGTCTTTCTTCCTCATGCAGTGGTAGAGGAGTTAGGGAGAAACAAGTAGCTGGTATCTGTATGAAGTTCACGTGCTAACTAAAACACTGTAATTACCAATTTCTTTCTTTCCTTTCTTCTTTTATAATCCCAGGCCTCAGAAATCATCAATTTAGGTTTCCGTGACAGAGAAAGGTTAATAAGACTTCGTTTCCATTGCTTCTAACACAAAGTTTGGATATATATTTTGCCAGTAAATATTTAATAGAGAAGAATTCTGTCTCACTGTAACTACAAGTGAATCGTGAATTCTTAAATCTTTAAGATTTTAGGGTCTCAGTTTTCAGACTTGTAAGATACTTTTAAGAGTAACCTGAAAGTCAGTAAGGCTTCCAATCAAGGTAAAGCTTCCACTTCTTGAAATTTTCACTCGGAAAATGAATGTTTTGCTTTATTTCACCTTGATGTTTCTGAATTTCCACACAGTGTGTGGAGGTGTACTGCCTTCTGTGCAATAACTATTCCTTTTTCTTCACATTGCAG
Seq C2 exon
TGTACTATAGCCAGTCAAGGAGTCAGTCCATGTTCTACCCTCACAAGCAGCACTACATCTCCAAGCACTGATAGCCCATGCTCAACTCTTAATAGCTGTACTGGCAAAGCAGCAGCCAACAAAGGTAGTCCCTGTGAAACCATGAGAAGCCCTAGCTCCACCCTGGAGAGCAAGGACAGTGGAATAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570:ENSGALT00000020527:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=NA C2=0.797
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCCTGATAAAGACTCAAGCTG
R:
ATTATTCCACTGTCCTTGCTCTCC
Band lengths:
310-1209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]