HsaINT1043657 @ hg38
Intron Retention
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:159149142-159150556:+
Coord C1 exon
chr2:159149142-159149272
Coord A exon
chr2:159149273-159150369
Coord C2 exon
chr2:159150370-159150556
Length
1097 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TCCTTCCATTCATCTTGCAGTGC
3' ss Score
9.85
Exon sequences
Seq C1 exon
AAGCAAAGGCCGATAATGAACCGAGCTGTTCGCCGGCAGCTCAAGAACTGTTGACAAGGCTGGGATTTTTACTGGGAGAAGGGATCCCAAGTGCCACACACATAACCATTGAAGACAAAAATGAAACCATG
Seq A exon
GTAATGCCCGAGGAAGACACTACATTGCATACCTCTTCAGAGGATGAACGAAGCAATAACCATCTTCTCCCTTTCCTTGAGCAGGGAAGCCATTGTTCAGTTAAATGAGTTCTGGGCTGTTGTGTATTGAAATTTATTTCAACAGTTTGGTTCTGGGTTTTTGCAGTGGGGAGGTAGGGAAAAGCAGAAAGAAGCAGAACGTAAGAAAATGTCCACATTAACCTTCTAGTCACCACCCAGAGAATAATGGCCACATGAATTAAAGAGGCTAAAAGAATGCCTTCATAATGCTACCAGTACTTTTACCTTTATAGCACCGTTCTTCTCATCTGGTTGCTTTGGTATACGCTTTCCTGTGCCTTTTTAGCTGTTGAGATTTTGGAGGGTCAGTGGGGTGAGGAAAAGATTTATAGGAGATGAGGCAGAGACAAAATAAGATGAGATCAAATGGTCCATCTATCAGGAAAGCACTTCCCCTCCAAGGGAGCAGCAGCATGCACCCTGCCACCTCCCAGATGTGATGTGTGCATCTGAATAGCAATGCAGGATGGAGCTTCTACCCTGGTGAAGGTCTCTGCACTGCAAGGGAGGGTGTCATGCATTGATTGAGACTGAGTGGTCACCAGTCTCCTTCCCCTGATTGCAGAGCCCATAAATCTTGAGGAATTGAATCAGGTTGCAGTGTTCGTGAAACATCACAAAAACAGAGCTCCCAGGTCTTCCGTACAGAGGTCAAATAACCCATTTGTCTTCTGCAGACTTCAAATGAAAGGAAGTCTGCCTGTTTGCCATTTCTGTTGTACAAATGTGCATCCTCACTAAATTATTGCTAAGACTGACCTTTTAATAAAAAGGAAAATCACAAAGGAGGGGAACCGAACAAAGATACTGCTTTCTCAAAATTTGGAAGACCACATATACATTTATATAGATAAAGCTCCATGAATCCATATCTATACACACATATCTCTTTAGATTTTTTTTTTAAAACTTCCGTTTTCCTGTTCTTAGTTTTATTGTTTTAGCACAAAAACAAAAGCATGTGTCGAAGCATCCTGTGTAAGCCGTGCTAACTCCTCCTTCCATTCATCTTGCAG
Seq C2 exon
TGCACAGCTCTGAGTCAAGGCATCAGTCCTTGCTCCACACTAACAAGCAGCACCGCATCTCCTAGCACCGATAGCCCCTGCTCAACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAACAAAAGTCCCTGTGAGACCATTAGCAGCCCTAGTTCCACCCTGGAAAGCAAGGACAGTGGAATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183:ENST00000263635:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.619
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAAAGGCCGATAATGAACC
R:
CTATAATTCCACTGTCCTTGCTTTCC
Band lengths:
318-1415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains