RnoINT0147530 @ rn6
Intron Retention
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45843760-45845123:+
Coord C1 exon
chr3:45843760-45843890
Coord A exon
chr3:45843891-45844936
Coord C2 exon
chr3:45844937-45845123
Length
1046 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TCCCTTCCTTCCCCTTGCAGTGC
3' ss Score
12.96
Exon sequences
Seq C1 exon
AAGCAAAGGTGGATAATGAACCGAGCTGCTCTCCAGCAGCACAGGAACTGTTGACAAGACTGGGATTTTTACTGGGAGAGGGGATCCCAAGTGCCACACACATAACCATCGAAGACAAAAATGAAGCCATG
Seq A exon
GTAATGCCGGAGAGAGAGGCTGCATTTCCTACATGCTTAGCTTGCACCCTACAAGTGTGTGTGGGAGGAGGGGCCTCACTTTGTTTTTGGGTCAGATGAGCTCTGGGCACTCGTGTTTTGAAATCTATTACAACAGTTTCTCTGGGTCTCTGCAGGGGATGGTGGTGGAAGTATAATTAAGGCCAAACAGAAGGAATCCGAATTTAAGAAAATGTCCATGTTAACCTTACAGCCGTGGCCCAGGGTATCCCAACTACGTGGCTGGAAGTCATCTTATAATAAAGCTACTTCTGTCTGGAGAGCACTGTTCCTCTCAATAGACTGCTTTGGTCTAAGGTTTTCTGTGCTCTCTCAGCTGCTGGGATTTGGGGGTTGAGGGGGAGGGATCAGTGGGACGAAGAGAATATTGCTAGGAGATGAGGTAGATAGAAAATGGGAGAGAATCAAATGTTTCATCCTTCAGGGAGGCATGCTCTGTCTCAGGAGCTCCCGCCACCTCTGAGTATGCAAGTAGCAGTGTGAGGGTTAGAACTTCGGCCTCCCTTCGCCCAGGGGGTCTCTGTGAGGAAGCATGGCTGGGGAGGCATTGACTGAGAGCGCAGTGGCCACCAGTCTCCTTTCCTGAACACACAGCTCATAAATCTTCAGGAATAGAATCAGGCTGCCGTGCTTGGGAAACATTATAGAAACACGGTCCCCAGGTTTCCCGCACAGAGGTCAAATAACCCATTTGTCTTCTGCAGACTTTAAATGAAAGGAAGTCTGCCTGTTGGCCATCTCTGTTTTATGAATTTGTGTTCCCACTGAAGTATTGCTAAGACTGCCCTTCTGGTGAAACCTCCTCAAAGGAGGCAGCCAGAACAAAGACCACGTTTCCTTTAGCATTTGGAAAACCGTGTCTGTCCCTATTTAGCCACAGAAGTTAAAAACTGTCTCCATTTGCCTTGTGTTTAAGTTTCATCATTTTAGCGTCCAAAACAAAAACATGTGTCGAATCGCACCGTGTAAGCCATGTTAACTCCTCCCTCCCTTCCTTCCCCTTGCAG
Seq C2 exon
TGCACAGCCCTGAGTCAAGGCATCAGTCCTTGCTCCACACTGACAAGCAGCACCGCCTCTCCCAGCACCGATAGCCCCTGCTCAACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAACAAAAGCCCCTGTGAGACCATTAGCAGCCCTAGTTCCACCCTGGAGAGCAAGGACAGTGGAATTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394:ENSRNOT00000038983:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.587
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAAAGGTGGATAATGAACCGA
R:
CTATAATTCCACTGTCCTTGCTCTCC
Band lengths:
318-1364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]