BtaINT0145422 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005493 | TBC1D14
Description
Bos taurus TBC1 domain family, member 14 (TBC1D14), mRNA. [Source:RefSeq mRNA;Acc:NM_001099176]
Coordinates
chr6:118305951-118312151:+
Coord C1 exon
chr6:118305951-118306209
Coord A exon
chr6:118306210-118309680
Coord C2 exon
chr6:118309681-118312151
Length
3471 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGTCTCCCTGTGATTCCCAGGTG
3' ss Score
9.1
Exon sequences
Seq C1 exon
GATCTTCACTCTCTACAGCAAGTCCCTGCCCCTCGACCTGGCCTGCCGGGTCTGGGACGTGTTCTGCCGAGACGGGGAGGAGTTCCTGTTCCGCACGGCCCTGGGCCTCCTTAGGCTGTTCCAGGACGTCCTGACCAGGATGGACTTCATTCACGTGGCGCAGTTCCTCACGCGGCTGCCGGAGGACCTGCCCGCCGAGGAGTTCTTTGCTTCCATTGCCAGCATTCAGATGCAAAGTCGAAACAAGAAGTGGGCTCAG
Seq A exon
GTGAGTGGGCTTTTGTTCCCTATCCCGTCTGGTTGAGGAAGCGGGTTATGTGGAGCGCCCTGTGAGGAACCAGCCCTCTAGAAGGTGCCCTGGATTTGGGGCCTGGCTCTGCCACACAGAGTCTTAGACAGTCGTTTCCTCTTTGAGCGAAGGAGCTGGAGAAGAAAAATCTCCCCACCCTTCCTACAGGGGCTTCCCAGGGGGCTCGGATGGTAAAGAACCTGCCTACAATTCAGGAGATGAAGGTTTGATCCCTGGGTGGGAGGATCCCCTAGAGAAGAGAAGGGCAACCTGCTTCAGCGTTCTTGCCTGGAGTATTCCCATGGACACAGGAGCCTGGGGGTCCAGTCCCCGGGGTCGCAGAGAGTCAGGCACGACCGGGCGACTAAACAGCAGTGGCAGCACAGGGCCCTCCGCCTGGTGACAGCGTTTTGTAAACCAAGCTTCCCCCCTGTTTTTAAATCCCAGAGACAGAGAGCCAAGGGGGCTGACCTGTCGCCATCGCACCGACAGAGGAGGAGGCCCAGAGACGGGCTGTGTGTCCTCAGTGTGGGAGGGGAGGGGCAGGGAGGGCTCCCCAGACGTGTTGCTGGGGCTCCGGCAGCTGCCCTCAGGGCCGTCCGGCGACCGCATGGGAGCGCGTCCTCCCGGGCTCCCCGCTTCCCCTCTGGACTTCGCTCCTAGGCCTGGTTCCTAGTCTTTATCCTATGAAAGGGAACTAGAACACCCGGCCGCAGGAGCTGTGTGTGCTCAGTCCGCCTGAGCAGCAAGTCTGGGGGAGGCTTGTCCTTGCCATACAGTGCTTGTTCCTGATTTACAGGTTTTTTTATTAGTGGAAGATTTAAAGTACATTCAAAATAGAAGAAGAGAGAATAGCCAATCCCCGTGAGCCTGTCAAGTATCCCATCAGCTTTCAGATTTCTGTTTTCAGACATCAGCAGTAGCTTTGTCGTTTGCTTGAATCAAGATCTGGATAAGGCCTACACGTTGTAATTGGATGACAGTCTTCTGCGTCTTCTTACAGTGCACAGGGTGACCCTCCCTTTCCACTTCTCCCTCCCCTTTACTTAGTGAAGAAACGAGGCCACGTCCAGTAGCAGTTGTCACAGTGCGGATTTTGCTCCTTCTGTCCCTGTGGTGTTCATCGTGGCCCTTCTGCTCTCTTTCCTGTAAATTGACAGACCTGGAGGCTCGAGGAGGTTCCCAGTTTTTATGTTTGGCCAGATTACTTCACAGGTGATTTGACTGTCTCTCTCTGATCTTAGTTAGCGGCCTGTTTATTTTTGTTTCACAGCTTTAATAATTTACAGTACCATAAACTTCACCCCTTTTAGAGTACACAGTTTATTACCCAGAGAGGGTCCCCTCTGCCCTGGGCCCTGCGGTCTGCCCCCGAGCTGGTCCTCTCTCGCCAGCTGTGATGCTCTCTGGCTGGTGGCCTGCCTTCCTGCCAGGTCTTTAGGGAAAGAGCACAGCTGCTGTGGGCCCTTGGGTAACACTGTGAAACGCTCCCCTGGTTTTACCAGCCAGAGGGCGGGGGCACTGCTCTCTGCTTAGCTAAGCGCTATGAGTTACAGTTCTGAACTAAATGCATTCAGTTTATGAAAAGGGGTGAAGTGCTGACCCATGCGACAGAACGGGTGCACCTTCAGAGCATGGCGCTAAGTGAGAAAGCCAGACTGCAGAGCACGCACTGCGAGGCCCCATTCCCGTGCAGTTTCAGAAGGGAGCTGTAGAGATGGGACGTGGCGCGTGGGGGGCAGGGGCTACCTGTGCCCCTGTGAAAATGCCCTGAAATTGGCTGTGCCGAGGGCCGCATGTTATCTGTGAGTATATTAAAAGCCACCAAATTGAACACACAAAGTGGGTGAATTTTACTTATGGTGTGTGAGTTATGTCTCAGTAAGCTGTTAAAAAAACACAAACCTCAGCTCCTGTGTGAGCAGGACCGGCTATATAATTATCAGGGATCTGGTGAGAGGGAAAAAGAGCCTTTCTCTGATTAAGAAATAAATAGGCAACACGCGATGAAGGTATGGGGCCTCGTGTTCAGAATCAGTGTCAAGGGTTTGAGGATGGAGACTGCAGAGCGCTGGGCTGGGCAGGGCCTCTGAGTGGGGTCCCCGCTGGACTGTGCAGGTGCATGCCCACCTGTGTGTGAGCGTGCTCTGGAGTCTCCCGGGACTCGGCCCCTTCCACTCACGCTCTGAAGTAGGTGCAGAGAGCCAGGGCCCTTCCTGATGACCGTGCCCGTCACTCAGAGCCCTCGCTGCTTTGGCTGTCCGTCTCGCACAGCTGTGGTCTGCTGACCTCCCTGTGTGTTTCATAGTCCGCCCCCGCCCCTGTCCACACACCGGCAGAAACATGCACAGACGGACGGGCCGAGTCCAGATCTGCCATTCTGCTTCTTGCGTTTCAGGTGAACATTACCGGTTAGGACCGGGTCACAGGTTATCCGAGAGTAGGCGCCCCTGATAGTGGGTGTGATGGAAGTTGGCCTGGCAGTGGGTTCCAGGTGCCATGGGAATTGTGGTTTGTGCCCGTTTCTCTAAATACGGTGCTTAAGGGTAAGATCCTGCTGTGCTTTAGCAAACAGTTAAGTGGTTGTGTTTGGCTGGCCTTCTCACTCAGGAAGAGAAGGGGGCTTCTATCTGCCGTTAGCCCTTCTGTGCCGTGTATTTGAAACCCTCATACCCCCTGTAATTTGTACTTCGCCTAAAGAGGTCCAGTGCTGGGCCCAAGGAGGTTCAGGAACTGGTGCTCTGGAGATCCCCTTGGTTCCGAAAGAAGACCCATGTAAGTGTGGATCCGTGTGAGTGGTGTGGCCTTTAGCGGGTCGCTCGTGTGAGTGTCTACCGCTCCCTGCCTTCCACGCTGTGCGGGTTACACGGCTGCTCTGTGGGAGGTGCCTGGCGGTGCTCTGCGTGGCTGCAGCACTTGGGCCCGTCCTGTCCCTGCTGTTGTTAAGCGATCACAGTGGGATGTCATGCTTTTAAAAATGAAGGTGTTAACTTAGAGCTCCGAGCAGCGAGGAGGAGGGAGCTAATCACCCTGGGGATGTGTGGAGAGGCCTGGCCGGGAGCTGGTGTCTTGCGGGCCTTCGAAGGATTAGTCATTCCCTGGTGAGGAGAAAGGGACGGGGCAGAGGGACCAGCAGCGTGGGAAGGCGCAAGGGCGTGTGAGCCTTCTGGAGGCAGGGCCTGGCTCCGCTGGTGGGGAGCGCGGGGGGCTGGAGCCAGACTGGAGAGGGCAGAGCCCAGGAGCCCGGCCTTGACTTCAGCGGCTGGTGCTCGGAGGGAAGTCCCTGGGCTAACGTTCTAGCCCAGAGAGGGTGTGACCTGGATTCCACGGTAGAAAGATGAGTCTGCAGGAATGTGGAAGGTGGACCAGAGGAGTGGCCACCAGGGAGGACGTGAGGACCTGTGTCCGTGTGTCGCCAGTCGCCCACCTGTGTCTCCCTGTGATTCCCAG
Seq C2 exon
GTGCTGACCGCCTTGCAGAAGGACAGCAGGGAAATGGAGAAAGGAAGCCCATCTCTGCGGCATTGACGAGGCAGGTGGACTCGTGATCAGCTGGGAAGCAGGCTCCACGTGGCACCTGTGTGGCTTCAGGCGGATGCCCTGGCAGCTCCGGAGGAGAGGGGCTGTTTCCACGTTTGATCCCTAATGCTGGAGTTGGCCTTAAACACAATACAACAAACAAACAAACACTTTTAAAGAATTAAACCAAGGCTAAGCCTTAAGAAGCTCAGTGGAATGACGACCATGGCCAACCACTGCGTATTCTGCATGGTTTAAAAATAGGGCAGTGGCTAATTCCCTCCCCTCATTTCAGCAAAAGTTGATTAAATTGTAATGCTTTTATGTCAACTACCGGAAAGTACATTACAATTTTTCATTAGCCAAGTTGCATGAGAAATGTTACTTGGGAGACCTCAGAGGTGGCATTGGCCCATATCTACATATTTTAGTCCAAAAGGGACTGCTGATTTTAGTTGCCGAGGTAATCCTTCCAGAGCCGCAGGTCGTGTTTTTAAAGCCCGCCTACCAAAGACAGCAGGACAGGAAGACGGGCTCTCAGAGGACAGCCACTGGTGCGCGTGGTCTCCCCGGAGCACACACGATCTGACCTTCAGGCTGACCTTTTACCACGTTGCCTTGACAAAATTCCAGCACCGGGGCTGACAGTGCACGCTCAGGTTCCGGGGGGTGCCCCGCTGTCCCAGAGCCCGCAGCCCCGTTTGTCCAGCAGTGGTGGCTCACCCAGACCCTGCGGCAGCAGAGACGGGCGTTAGAGCAGAGCCAGCCTCTCTGAGCCGGGCGAGGGGAGGCAAGACGCCCCGCCCCTGGCCGCCCGCTGGTTCCCCGGAGACTGGGCCAGCCCGCGTGGGATGGGGCGCTCCTCCTGTCCCTGCAGGGCAGGTGTGGTCCCTGGGGCGGTGACCCTGACACGGTGGACTCAGTGGATGGCTGTGGGGACCCGGGCGAGCAGGACGCGTCCAGTTAGCTTGTCAGGAATTCTCAGCATCCCCCCCCACTTCATTAGCCACCTTTTTGTCCCAGCTTTTCTTGATGCATTTGGCGAACCTTGCATTAAGAGCTTTGGTTATCTGAATTCAGAGACGTGAAGACCGTCGTCACAGAGAAGTCCAAAGGACAGGCCCGTCCGCATGGACACGGCTCCCACGCGCGCACGCGCCGGTCTCTGGGGGAGAGAGGGCCCGTGGGCACCTGCCGCCCAGCCGCCCTTCGCAGCCATACGCCCGCCCCCGGGGTGGAGCCTGACCACGGCGTTACTTTTATAGGTTTTTCTCCACCTGCCTTGCCCGCCGATGACACTTCAGGTACAAAGCAGGCTGCCCAGCCGCTGGCCGTCCTCATGCCCTCCACCCCGGCTCTGTCCCACGTGTCCTTTCCCCTTCGTGTTCCTGGCTGAACTCCCCGGGGAGCTTGCAGAGCATCCCCCACCACTTCCTGCCTCAGCCTTGAAGCACTGACCCGCCTGACCCCTTGGAGGAGGCCTTCTGTCTCCGCCGAGCGCTGAGGCAGCCGGTCCCGGACTCCTCAAGAGGCTGAGCGTAACCGGGCCAAAAACGGGCCGCCGGCCCCGTCACGCCCTTCCTCGTGGACGTACCTGGTCTCGTCCCATGACGTGGGCTTTCTGTTTGTGAAAGATGTGTATATTTTCTTACTGTACATAAAGACATTCCCAAAGTGGTGACAGAAGGCGCCGCAGCCAGGCCGCGGGCAGTTGCTGAGAATGCGTTTGTGCACCTCCACATGCCATCAGCCCCGCCCCGCCCTTGACGTGGCTGTTGGATGGTTCGACGTAAGTCTCTTTGGGTAGCACCGTATATGCATTGCGTTTTTAAGCAGGATTCCAGGCCATTCTGCAGCCCTTCCGGATCTGTAGTTTAGAGGACGTTTTCATGACCTGTTCAGGGACCACATGAGCTCTCTGCTGGCTTGCTGTGTCCACCTCGGAGTCTGGGAAGTTCAAGGTCCCAGTCCAGGGTCGCTCAGCCACTTGCCACAGAGGGCAGAGGGCTGCCGGACCGCACAGGGCTGCGCTTCTCTGCTTACTGTTCTGGTTTCGGAAAACTGGAAACAGAATTGGAAGCGCAGCCCCCTTGGGAAGTCGGCCATCTCCACTTCCGGTGCCACTGATTTTCAGAAGGTGAGATGTCAGGCTTGGGGCCTCTGTGGCTGGCACCTCAGAGCCAGTTGCTGTGTCCCCACCAGTTACTGAAATCTCATCTAGAACAATGTCCACTTTAAAGGGTACTTTTTAACTGCTCCGGTTTTGACTATTTTAAATAATTTGCTGATAACACTTGCTACATATCATGTTTTAATTGCTTGTACAGTTAACCTTTAATTTTATTTAGTAAAGTGTATCAAACTAGGGCTTTTTGAATTGTAAATACGTGGTTTTATTAAATAAAAAGTCATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005493:ENSBTAT00000039389:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.381
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(19.7=51.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]