RnoINT0147939 @ rn6
Intron Retention
Gene
ENSRNOG00000006400 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:RGD Symbol;Acc:1309993]
Coordinates
chr14:79434176-79438764:+
Coord C1 exon
chr14:79434176-79434434
Coord A exon
chr14:79434435-79436258
Coord C2 exon
chr14:79436259-79438764
Length
1824 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TGTCTTCTCTGTGATTCTAGGTG
3' ss Score
9.78
Exon sequences
Seq C1 exon
GATTTTTACCTTGTACAGTAAGTCCCTGCCCTTGGACTTGGCCTGCCGCATCTGGGATGTATTCTGTCGAGATGGAGAGGAATTTCTCTTCCGCACAGCTCTGGGCATCCTGAAGCTTTTTGAGGATATCCTGACCAGGATGGACTTCATCCACAGTGCCCAGTTTCTGACCAGGCTGCCTGAGGACCTGCCAGCAGACGACGTGTTCGCAGCTATCTCTACAGTCCAGATGCAAAGCCGCAACAAGAAATGGGCACAG
Seq A exon
GTAAGCGAGTCTGTAGCACAGCCATGAGACTGAAGCACTGTGCTGCTCAAAATAGTGCTCAGGCTGGAGGTGCGCAGCCCGGTGCAGAGCTGGTTCTGACAGCTGGAGGGAGGAGTATGTGTAGGAAGACCACCTCCATTCTGACGTGTCAGCCCTTCTAGTCTGTAGGACTCTGCCAAAACCCTCTGCTCCTCCCTAACTTTTTCCCTTTATTATTTTCTGTGTATATGACTATATGAGGGAGGAGCAGTATACATGCCCCATGAGAGTGTTTAGGTCAGCACACAACTCATGGAAATTGGTTCTCTCCTTCCACTGTGTGAGTCCCAGGGCTGAACTCAGGTCTTCAGGGTGGCAAGTGCTTTTACCTCTGAGCTGTCTCAACAGCCCAAGGTGTTTCTTAAGGAGGTGAAAATGCTTTAAAGCTGACTTTTGGTAAGGTTTGCACACACCTTTGAAAACCTGGAAAACCACTGACTTGCATGCTTTACGTGAGTGAGTCGGCTATGAATTCTGGTTCCACAAAGCAATTAAAAAGGTGTGCACAGTGGGAGCAGGACTGACTGTGCTGTCATCCACGATCCAGGGACAGAGGAGAGCCTTTCTTTATTAGTAAAGAACAGTGTGAATAGAAACATGGGGTCCTGGCTCTGAAGTTAGGCTTAGAATTTAAGATGGTGGCAACAGAGCCTGAAGAGAAAGAGTCACTTTGAAAGCTGTGTGGAGGCCTGTGGGAGGGCTTTTGGAATCTTCACTTATTCTGGTTTTTTGGATCCAGAGAAAGGATCCTCTGAGATGATCCTTTTCTCAGAGGCAGGCCTGCCCTTCCCTGACTACCTGCTCTCACAGCCACAACTGCCTGTCTTCCACGGTCTTTCTAGAGATAGCAGGGCTCATGCCTCACCTCTGTTGGCTGCTGTACATACACAGCGTGCAGAAGGAAGGAGTCAGTCCAGGTTTTGTTTCTTATGTTTTAGGGATTAGGTTAGAACTAGGTCATGGGCTATTTGACATGAAACAATGTCTCATTAGTGGGTTAGTGGTAGCAGATAATCTGATTGTAGTGGGCACTGGCGAGTTCACGCAGGGATATGCACATTCGGTTTCAGCCCTGTATTAGAGTGTGTGGTAGTGCGAGCTTTTCACAACAAGACACTATGTAGGTTAGATTGGCAGTTGTGTTCTTTTGAGCGTAAAGGGTGCTTTAGTCTGCTATTGCTCCTTTTGTCCAATTTTCTTGAACCTCACTTAATAGGTTTCTGCTTCACTCCCCATCACTTGTGTTGCAAGGTAAGTCCTGTGCTGTTGGGATTCCCAGGGTTTTGAAACTGGATAGCTTTTCGGTGCATTTGACAGAAGTCCAGGACCCTCAGAGGGGCACTGACCTTCTGACTCTGGGTCAATAAGATGTTGAGTTGAAGGTGAGGGCAGCCCTGCCTCACAGAGGCTCTGCTTGGCATGCAGTGGGTGTGTAGCAACGGAGCCTTTGACTGTCACTGCTGTTAGGCAGCAGTATAGCAGGATGCTTTTGAAAGGTGTCAACTAAGAGCTGGGGGAGCAGAGGGGAGCACAGTCACCTCAAGGCTGTCACACCTCTGGCCAGCTTCCCAGTGAAAGAGACCAGCTGCATGTGCAACATGGAGAAGATCTTGTTAGTGCCCCAGAGGAAGCCTGGGCCTCAATGCTGTGCTCAGGAGCTAACAGACAGGCATGCGGGGTTGGGGTGGGGTGTGAGATGACTGCTGCTTTTCCGATGTTTCTATGAGATTCTCGGGTCAGTGTGGCCTGTGGGTCTAACCACAGTTGTCTTCTCTGTGATTCTAG
Seq C2 exon
GTGCTGTCTGCACTGCAGAAAGACAGCCGGGAAATGGAGAAAGGAAGCCCATCACTCAGACACTGAGGCTCAGGGCTAACTCCCACCTGCCACTACAGCAGAGCTCGACATGGACCTGTGTGCTTTCAGACTGAAGCCTGGCATGAACAGGGCTCTTTCCATGTTGGCTTTCTGATGCTCAAGTTGGCCTTACAACAAAACAGAATTACATCCAGGTTTAGCCTTAAGCAGCTCAGTGGACCCATGCACTGTCATTGGTCATGGCTAGCCGCTGCATTTTCTACATGGGTTCAAGAAAGGGCAGGCTGTCTCTGAACCTTTATTCCAGCAACAGTCAATTAAATTGTAATGCTATTATGCCAACTACTGGAAGGTACATTACAATCTTTCTTAGCCAAGATGCATGAGAAATGTTATTAGGAAACCTCAGAGTTGTTATTGGCTCATATGCTTGTGAGAAAGGAATTATTTAGTTACTAAGATAAGCTTTCCAGAGATGAAGGGTGTGTTTTAAATCTCATACCAAGGACAGGGTAAGGAAGACGGGCCCTTGGAGGGCAGTTGCTGGTGAATGCTCACAGGCTTCGAAAATGCACTTGACCTTTGTGCTGACATTGACCCTGTTGCCTTGACACATGAGAGCAAGAAGGCTGAGTTCATATTAGGATCCTACTCTTCAAAGTAGCACTCACTGCATCTTGGGAGCCACACTGGTTGGAGCAGGGAAGTCACTTGCTGCAGAGGGACAGAGGCCGGCCCTGTAAAGAGAGATGTAGGACGAGACTGCAAACTCTCCTCTTCTTACCCGCTCGCTTCTGGGGAGGCTAGCATGACAGCCTCTGAAAACACCATTGTGTAGGAGATGGTTTCCTTGCTTAAGCTGAATGTCCCTTTTTGCCTTTGTCACCTGAGTAGTTGGATCCCTTCTAAGTGCCAGTGATTGTCCCCTATCCCCATCTGGCTTTAGAAAATGAGCTTCACACACTGCTGAAAGGACTGGAGTATGGCAGTCTTCCACATTCTCAGTGTCCCGAGCCCTTCCCCATTGCAGCTGATTCCTCTCAGCTCATTGGGGAGGTGGTGGTGGTTCTAGCTTTTCCTTGACTTAAGAACTTTGTATAAGAAATGATTATCCAAATTCACAGAAGTGAACAGTTTCTACATAGAATAGGACAGTCCAGTATCTATGGAAACGGGTTACCTCCTGATCATCCACTGGCATTCTGAACCCTGAGGTACAGGTAGGCCAGTCCTAGCCTAGGGCTGAGGACATATTCTCCAGCCAACACCTGTGTAGTCTGTAGTGCACAGCCCTCTACAGCCATACCTTCTACCCCAGAATTCACCCTCTCAATCGGTGTAGTTTCTGATAGCCGTAGGGGAGCCCTTGACTGACTACAGCATGTGGCAGGGAGGCTTGGGTCAGCCTCATGGCGCTGTGTTTGCATGGGTTCCCTTCATCTGGTGTGCCTGTTGGTGATCATCTAGTGTATCAGCAGGCTGTCATGTTCATGCTATTCACCCCATGCTCCCACTTTTTTCTTGGAGTCTCATTTGTAGTCTGTGACTTCTTCAGGGAGGCCACAGAGCACCCTCCATGTAGCTCTCTGCCTTAGTGTGAAAGGCTGATGTCTGACCTCTTGGAGGAGGATGTCTTCACCAGCCATCCAATGGCCTCCAGACCCAGCCATTCTTGACATCAGATACTGAATGTAGCCCAGGCCCAGCTGGCCACGAGAATCGCACTACCCAGCCCTGTCCGCTGTCCTTCCTTGCAGATGTACTTAGTTTCCTCCCACTACATGGGCATCTGTTCTCTCAAGATGTATATATTTTCTTACTGTACATAAAGACATTCCTTAAGTCATACAGAAAGTGTTGTGACAAGGGGACTTGGGCACCTTGTTGTGAATGCCATCGTGGAATTCTCTGTGTGTTCACAACCCAGCCCTTAACTTTTTCTTGTTTGACATAAACCTGTGGGCATGCATGAAGTTCTCCAACAAGACTCCATGCCAGCCAAGCACTGACTGCATCTCTAGTCCAAACAAGGTCTTTATAGACTGACTGGGGCTCATGTGAGCCTAATGTGCCCTCCTTCGAGGCTATACAGTTCCACGTTCCTCTACTTTGAGGGCGTCCCTCATACTCCTGTTGGCAAACTGGAAACTGACCCTACAGAGGTCTGCACCTCCCATCTCAATTGCCATTGACTTTCAGTCCCAAACTTGAGGGTGCTGGGCAGCTGGCACTCTTAGGGGAGCTTTCGGGAGAGGCTTCCTGTCACTTGGGAGCAGTGCTTACTTCGAAGGTACTTCTAACTGCTCAGTTTGTGACTATTTTTAAACAGTTTGCCAATAGAAAACTCCTGATAACACTTGCTACATATCATGTTTTAATTGCTTGTACAGTTAACCTTTAATTTTGTTTAGTAAAGTGTATCAAACTAGGACTTTTTGAATTGTAAATATGTGGTTTTATTAAAATAAAGTCATGTAAAATTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006400:ENSRNOT00000058414:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.381
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(19.7=51.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGCCCAGTTTCTGACCAG
R:
ATGGGTCCACTGAGCTGCTTA
Band lengths:
351-2175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]