HsaINT0164003 @ hg19
Intron Retention
Gene
ENSG00000132405 | TBC1D14
Description
TBC1 domain family, member 14 [Source:HGNC Symbol;Acc:29246]
Coordinates
chr4:7026731-7034845:+
Coord C1 exon
chr4:7026731-7026989
Coord A exon
chr4:7026990-7032053
Coord C2 exon
chr4:7032054-7034845
Length
5064 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
GTCTTCCCTGTGACTTCTAGGTA
3' ss Score
9.3
Exon sequences
Seq C1 exon
GATCTTTACCTTATATAGTAAATCTCTGCCCCTCGACCTGGCCTGTCGTATCTGGGACGTGTTCTGTCGCGATGGGGAAGAGTTCCTGTTCCGCACGGCCCTGGGCATCCTGAAGCTGTTCGAGGACATCCTGACCAAGATGGACTTCATTCACATGGCCCAGTTCCTGACCCGGCTGCCCGAGGACCTGCCCGCCGAGGAGCTGTTTGCCTCCATCGCCACGATCCAGATGCAGAGCCGAAACAAGAAGTGGGCTCAG
Seq A exon
GTCAGCGGGCTTTGTGTTCTTGGCTTCCCACAGCGTAGCCGGCAAGTGGCGCGACTCAGGAAGGCCCCTACGTAAAGTGCTGTCTGAGGACGTAGCCCCTTTGATGGAGTCCCTGGGCTGGAACTGAGGGGGGCCGGGTGGAGACGTGGCTGTGCCACAGGGCGTCTCGGCGGGTCGCCTCCTCTTTGGGTTTCTGTCAGCTGGATGGGGTGTGGATAATGAAAGCCTTCCCACCTCCTCTGCAGTGGCATTGGGAGGGTCAGCACTTGTATCATTATAGTGCTCTTTACATGTTAGAAAGTACTTTGTAAGCCACGTACCCCCCTTTTTAAAAAAAATAATGCCAGAGACAGAAAGCAAAGTGGACCCACTTACTGAGCCCCGTGGCCATGCCCTGTGGCAGGCTTTTGTGTGTGTCCTTGAGAAGGAAGTGGGATTACCCCCCTCTTACAACAAAGGGAGGCCCAGAGAGGAGGGCGCGGGTCCCTCCTGGGTCTTCCCATGCGCTGCTGTGCCCTCTCTGGGCTGAGTGCCCCAAACAGTGGCGCGGATAGTCCGTATCCCTTGGTTTCCCTCCAGGCATCCCTCCTAGGTCCTGTCCCCAGTGGGATTGACCTGCATTTCCTGTTCCGAGTCTTTGTCATACTAAAAAGGAAAAAAAAACCAGTTTGGGTTCTTGATCCTGCATACACTCTGCATTGGTTTGAAGTCCTTGTTGATTGACGTCTATGAAGACTTTTCCTTTTCTGTACGTGCTACACCATGCCTGGGGGATTTCTTTGTTTTGAGAGAGGGTCTCGCTCTGTCATCCAGGCTGGAGTGCAGCCCCCGCCTCCCAGGCTCAGGTGACCATCCCACCTCAGCCCCCCGAAATGTCTGTTCTTGATTTAACTTTTTTTTTTTTTAATGGAAGATTTAAAATATTTACAAAACTAGAACAGCATAAAATAATGCACCCCCACACGCCTGCTCTGCAGTGTCAGTGACTGTGGAAGCGCAGCGGCTGTTGGAGCTGCCTCCCACCTCTCCCCTTCCCACCATATTGAAGCGAGTCCCAGGCACCGTGTCACCTGTTGGTGTTAGCGATCTCTGACTCATATGGGCTCTTTTAACGTAACTGCAATACCGTTACCACTCAGCTACTAACTCCTTCCTATCATCAGATATCCAGTTTTCAAATTCAGATGTCATAAATGGCTTTATAGTTGGTTGGAATCAAGATCTAAATAAAGTCCATGCCTTGTGATTGGTTGAAAGCTCTGTTAAGCCTCTGTAATATCTATGCCACGCCACTTCTCACTTTTTAGCCCTCTCTTGCTTGCCTTTATTTGTCAAAGAAAACAGGTCATTTAGGCTGGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTTGGGGGATCACTAGAGCCTAGGAGTTTGAGACCAGCCTGGGCAACATAGTGAGACCCCGTCTCTACAAAAAATACAAAAATTAGCTGGGCATGGTGACGTATATCTGTAGTTCCAGCTGCTAGGGAGGCTGAGATGGGAGGACCATTTGAGCCTGGGAGGTCAAGGCTGCACTGGGCTGTGATTGCGGCACTGTGCTTCAGCCTAGGCAACAGAGGAAGACCCTGTCTTAAAAAAACAAACAAACAAACAAAAAAAACAGGTTGGCCAGGTGCAGTGGCTCACGCCTGTAATCTCAACACTTTGAGAGGCTGAGGCAGGTGGATCACGAGGTCAGGAGTTCAAGACAAGCCTGGCCAAGATGGTGAAAACCCATCTCTACTAAAAATACAAAAATTAGCCGGGCACGTTGGCAGGCTCCTGCAATCCCAGCTACTCGGGAGGCTGAGGTAGGAGAATTGCTAGAACCTGGGTGGCAGAGGTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGGCAATAGAGTGAGACTCCATCTCAAAAAAACCCCAAAAAAGCAGGTCATTTGTCCTGTAACATTTCCCACTGGGGGAGAGTTTTATGGCATATACATATGTCACCCCCCCCACACACATCACACACCTATACGTACACAATCACCCCACACACACAATCACCTCCACGCACACACATTGCACATCCATTCACCCCCCATCTCACACACCCACACAATCACCCCCCACACACCTACACATACACAGTCACCCCACACATAGACACGCACAGATCACCCCCACGCACACTCATTGCACACCCACAGTCACACCCCTACACCTCACACCCAGTCACCCCACACACACATCACATACACAATCACCACACACCACAATCACCCGACACGCACATCACACACCCACCCACGCATACAATTACCCTACACAGTCACATCCACACACAATCACCCCACACACATCACACACCCCCACAATCACCCCACACAATCACACACCCACACAAAATCACCCCCCACACATCACACAACCACACACAATCACCCCCCACACATCACACACCCACATACACAATCACCCCACACACATCACACATCCATACACAATCACCCCCTACACATATCACACACCCTTAAATACACAGTCACCCCACACAGGCATACCCACACACACACAGATCACCCCCATGCACACACATTGCACACCCAGTCACCCACAATCACACACATACACAATCACCCCACACAGTTACCCACACGCACAGATCACCCCCCACACACACATTGCCCACCCCCCCACACATAGATCACCACTTACACATCACCCCACACACACCCACACATACATGCACACATCACACACCTACACATTGCATACCCACACACACACCTACAGATCACCCCCCACATACACCTATCACAGCCCCACACACACGTCACCCCACACATCACACCCACACGTACACATTACACACCCACACACCTCACATGCACATACACACCCACGTACAGGTGCAGGTCAGTCCCTGCGCATCCACATACTGCACACCCACATACACAGGAAAGGATTAAACCCAGATCAGCCATTTTGATCCTTGCATATTTTAGGGACTAGGTAAAAACTATTGGTTAAAACTGGGTCAGATTATTTGACCGTAGGACATTGTTATTAATGGGATGGTGATAGGAGTTAGTCTGATGATGGGGGTGGGGGGCTTGGGCATCAGTGACGTGCTGTCAGTTTTTTGTTTGTTTTTTTTTTGAGACGGAGTCTCCACCCTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCTTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCGCCTCCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCACGTTGACCAGGCTGGTCTCAAATTCCTGACCTCGCGATCCACCTACCTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCACACCTGGTCCAGGCATCAGTAACTTTTATACAGTTCAGGTCTCATGGGACTTGTGGTCCATGCACATTTCTCTCAAATCCTGTGCTTAAGGTTAAGACACTGGTGAGCTTTCTTTTTCTTTTTCCTTCTTTTTTTTTTTGAGACAGAGTCTCACTCTCATTGCCGAGACTGGAGTGCAGTGGTGCGATCACAGCTCACTGCAGCCTGAACCTCCGGGGCTCAAGCAATTCTTCCACCTCAATCTCCCAAGTAGCTGGGACTGCAGGCATGTGCCATGATACCCAGCCAATATTTGTTTGTTTTTGTAGAGATTTGTTTGCTTTTTTGTTGCTGAGGTTGGTCTCAAACTCCTGGGCCCAAGTGATCTTCCTCCCTTGGCCTCCCAAAGTGCTGGGATTGCAGGCATGAGCCACCACGCCCAGCCATGAGCTTTTTCAAAATGACTAAATGTTTATGTTGAGCCAGCAACCCCATTTACTTCAAGATGCAGGGGGACTTTATCTGCCATTATTCCTTTTCTGCACCTTAATTGAAACCAAAATGCTTTTACTTTTAAATTTGTGACTCAAAGTGGCATGGTTCCTGGCCCCAGGCAGGTAGCACTGTGTTACCAAGATTCTCTTGGTTTCACCCTTGGACTTTGAGCACGTCACTTCCGTACATGTCTGTTGTTCAGGCCCCTCATGTTGGGGCATTAGCCTTCCAGAGTTTGTCGCGTGGGCTAAGCGGGTGCTGGGCGCGAAGCGCTGGCAGAGTTCTCTGCTTGGCGTGGAGCCTGTTAGTGTTGCTGCAATTGCTAAGCAGCCACAATGGCGTGGAATATCTTTTAAAAGAAGGGTGTTGGCCTGGCATGGTGGCTCAAGCACTTTGGGAGGCCAAGGCGGGCGTATCATGAGGTCAGGAGTTCGAGACCATTCTGGCCAATACGGTGAAACCCTGTCTGTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCACACCTCTGTATTCCCAGCTACTCAGGAGGCTGAGGCAGAAGAATCTCTTGAACCCGGGGGTCAGAGATTACAGTGAGCCGAGATGGCGCCACTCCACTCCAGCCTGGGTGACAGAGCGAGACTCCATCTCAAAAAGAAGAAAAAGAAGGATGTTGACCAAGAACTGTGAGAACAGAGGAGGGAGCAGGCTCTGGGTGAGCTCAGGAAGGCAGGCAAGAGGAACCAGTGCCTTGAGGCCTTCTCAGGTGGCAGGCTTCCTGGTGGAGGAGGAACAGGGTGGCAGGAGTGCAGCGGGATGGGCACAGGGCTTATTAGCATCCTAGCGTTCAGGCCTGGGCTTCCTGGGTGGCCACTGCAGGACCCCAGTGAGGCCCCCAGCTGTGCTTTGACGTGGATTCTGTGGCCGGCTGGAAGGAGTGCAGCTAGCTCACCAGGCCAGAGAGGGCACGGGCAGGTGTCCATGTTGGAAAGACCACGAAGGACGTAGGAGTGGAAGACCCTGGAGGGTTGGAGGCAGTGGAAGTGGGGAGCCGGGGGACCCTGTTAGGAGGCTACTGCTGTCTCTGCTTCGCTGCTGTCAGGATCTGTGTGCGTGGTCACTTAACCTCAGCTGTCTTCCCTGTGACTTCTAG
Seq C2 exon
GTACTGACTGCATTGCAGAAAGACAGCCGGGAAATGGAGAAGGGAAGTCCGTCCCTCCGACACTGAGGCTGCAGCGGGAATTCGCACTCGGCACCAATCAGAGCCCCATGCCGCGGCCCCTCTGTTGTTTCAGACTGACACCCGGGCAGCCGAGAAGAACAGACGCTCTTTAAGTTTGATTCCTAACACTGGAGTTGGCCTTAAACAAAACAAACACAAAAACTTTTAAAGAATTAAACCAAGGCTTAGCCTTAAGCAGCTCAGTGGAAGGATGAGCTGCTGCGGACCACAGCCAGCCACTGCATCTGCTGCACAGTTGAACGATGGGCAGTGGCTCACCCCCACTCCTTTATTTCAGCAAAAGCTAATTAAATTGTAATGTTTCTATGTCAACTACTGGGAAGTATGTTACAGTCTTAGCCAGGATGCATGAGAGATGTTATTTGGGAGACTTGAGATGCTTTGGCTGATATTTACATGTTTTCGATAAGAAAGGGATCGCTGATTGAGTTATTGAGATAGTTTTTCCAGAGCTGGAGGTCACGTTTCTAAAACTCACCTACGAAAGATAGCATTAAAGGAACAGGGGCTCTCTGAGGATGGCCACTGATGTGTGTTTGTGGATACCTGGGCATCGACCCAGCCTGCAGGTGAGCTCTGGGCCATGTTGCCTTGACACAGTCACAGTGTAGAGGCTGCAGGTGCACACGTGGGCTCCAGTGGGACTGCGCTCTGGGAGACTGCTCCCTGGCATCGGTCCTGCGGAGGTGGAAAGTTCGAGAGGAGGAGCTATTTGCGAGGAAGCCCTGTGGCAATAGAGATAGGCTTAAAAGCGGAGAGAACACAGAGTGGAATCAGCCCCCTGTAAGTAAAAGGGTAGAGAAAGAGATGTGTGGCTGGGCCCTCTCCCACCTGCCTGTTCAGTGGAGGCCAGGGCAGCAGCCCAGAACAGCACATGTGGGGGAGGTGGCCCCTTGTGCCAGCAGTGGCTCCTCTCTGCCTTTGAGCCCTGCACAGCTGGACCCATCCTAAGTGCCAGTGAGTCCCTCACACATTTGACTTTAGAACGTGTGCTTCATGACCCGTTGTACAGACGGAGGAGCGAGCAACACACGTCTAACAGCCTAGACAATCTCGTCAGATGCTCATACTGGACCATCAGCCTCCCCATTTTAGCTGACTTTCCCAGGGTCGTTGGCAAATTTTTTGTTCTGTCTTTTCCTTGACTAATTGTAGAACTTTGTGTGAGGACTTTGGTTATCCAAAATCACAGAAATGAACCGTTTTGCAGCTGCGCAGTCTAAAGGGCAGGCCAGTGTCTGGAAGCAGGGCCCACGTGGCGGTCCGCTGGCAGGCTGGTCCTGGGGAGCATTCTGCGGACCCGGTCACGGGCTTGGTTAGTCATGCGTACATGTGTGCCTTGGGGTGCTCTGCACTCCACGGCCCTTCTCAGCCACACTTCCCACCCCAGGGGGTGCCCCCAGGCTGATCTCATTTCTGATGTTGAGGGCTGTTTGGCTCTGTCTGTATAGCTTGTAACAGGAGCCTTGGGCTAGGGGCTGGGGAAGGAAAGCCGAGCTGGCATTCGTTCTCTGGACTTTTTATGCCTGCCATACCCGCTAATGCTCCTCGAGGTGCAGGAGCAGGTTGCTGAGCCAGTGGCTGCCCCGTGCCCTCCTTCCCAGCACTATCATGTGTCACGTTTCCCGGACTCTGCCCCTACATCTCAGCTGAATCTCCAGGGAGGCTGCAGAGCATCGTGGAGACCACTTTCTGCCTCGGCCTTTAAATGCTGACTCACCTCCTCTCGGAGGAGGCGTCCTGTCTTCACGGGGGGGTCCCGGTGGCCTCCAGACGTAGCCATTTCCTGACATCAAGATGTTGAATGTAATCTGGTCTGAGCTGGGCCTGTGGGAGGGGCCGCCTGAGGCCTGTGCGCTGTTGTCCTCGCAGATGTACTTATTTTTGTTCATGTTACGGGCGTTCCGTTCCTTAAAGATGTATATATTTTCTTACTGTACATAAAGATGTTCCTTAAGTCGTACAGAAGGTGGCGCGGCAAAGGGCCTCGTGCAGTGTGTTCAGATTGCCCCTGGGGATCTTCTGTGTCTTCAGCGCCCAGCCCTGCGTGTTCCTGGTGAAGCAGTTTCACATCAGTCTCTCCAGATAGCACTACGATGTATTCCGCTTCTGAACAGGATCCCATGCCAGTGTGGAACACCTTCCCAATCTTAGTTCAGAAGTGGCTTGTATGACCTGTTCAGGGGTCACATGAGGTCTCGCCAGTTTCCTGGGTCCTCTTCAGAGGCCAGAAAGTTCTAAGTTCTGAGTCCCCGGCCAGGGTCCCTTAACACCTCGGCACAGAGGCTGTTGGCAAGTGTAGAGGCTGCCTCTGTGTGTGGTTTAAGTAAACTGGAAATGAGACATTGACGTGCTGCTCCTCCAGAGGTCTGCACACTCCACTTCACATGCCGTTGACTCTCACAGTCTAAGACTTCAGGGCCGGGACCTTTGTCCAGCCTGCACAGTAGAGTGAGGCTGCCTCTCCCGCCAGGCATTGGGATCCCATTTAGAAACGGCATTCACTTCAGAAGGTACTTTTTAACTGCTCAGTTTTTGACTATTTTAAATAGTTTGCTGAAAACTCCTGATAACACTTGCTACATATCATGTTTTAATTGCTTGTACAGTTAACCTTTAATTTTATTTAGTAAAGTGTATCAAAGTAGGACTTTTTTGAATTGTAAATAGGTGGTTTTATTAAATAAAAGTCAATGTAAAATTGTTACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132405-TBC1D14:NM_020773:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.381
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(19.7=51.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)