GgaINT0069300 @ galGal3
Intron Retention
Gene
ENSGALG00000015546 | TBC1D14
Description
NA
Coordinates
chr4:82894602-82897794:+
Coord C1 exon
chr4:82894602-82894860
Coord A exon
chr4:82894861-82897731
Coord C2 exon
chr4:82897732-82897794
Length
2871 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TCATTTCTTGAAATATCCAGATA
3' ss Score
3.98
Exon sequences
Seq C1 exon
GATATTCACATTGTACAGCAAATCTTTGCCACTAGACTTGGCGTGTCGTGTCTGGGATGTGTTCTGCCGTGATGGAGAAGAGTTCTTATTTCGTACAGCCCTGGGAATATTAAAACTTTTTGAAGATATTTTGACCAAAATGGATTTCATTCATATAGCCCAGTTTTTAACGAAGCTACCAGAAGACCTACCTTCAGAAGAATTCTTTACATCTATTGCTGCCATTCAGATGCAAAGTAGAAACAAAAAGTGGGCTCAG
Seq A exon
GTAAAGACAATTTTGATCTTTGATTAACAGATGAATGTGTTGTACCCGTGAAGAATGGTATTTGGCAACATCTAGGAGAATACTTCAGCAGACACAGGATAGGTAGGGTGACTTAGGTTGCTTTGTGTGTTTAGTATAGAAGTACCCCCAGACAGCAGGCTTTGTTGCCGAACTGTGGAGCAGATAGATCATAGAATCATAGAATGGCCTGAGTTGAACATGACCACAGTGATCATTGAATTTCAACCCCCCTGCTACATGCAGGGTCACCAACCACTAGACCAGGCTGCCCAGAGCCACATCCAGTTTGGATCTTAGGTTTAGCTCACTGTAGGGTCGGTATTGGCTGATATCTTACCTACCTTGTTGACTTCTGCACCAGCTGCCTTTCTTCACTACGTATCTCTGTTACTGAGTAAATTTCCATAAGGAAGGCCTCTTCCCTCTGTAGCCTGTCATCTTTTTCCAAATTAGTGGTGGGTAGAGGCTATGAGTTTACTTGCATCCCATACATACTAAGAATTGTTGAGGTGCCACAATTGGAACTGACGTAAAATCAGTACCAAGAGAAAGGGTGTATGGGATTTTGTTTCCTTTTACTAAGATGCTGACTATGGTAGCCTCTACCTTTCTTCAGTCTGAACAAAGTTCACTAGATGAGTTTGGACTCAAAATCCTGAATTGTGCTTTTCTGAGGAGCAGGCTTCTGGTAGTGTACAGGTAATGTGAAAAAGCACAGTATGTTGGAAAAATCCTGCAGTGGTTGCAGTATTCCTTAGTAAGACAATTCTTTTTGACTGAGACTATTACAGAATAAATTAAATACTTTGCTTTAGTACCCATTCGTGTTTTGTAGAGAAATGCCTTTTTAAATTAGCATAATGAATGGTAAGTGTGATGGATGCACCACTTGAGGTAAACTCTAAGGTGGACTGACCGATGGCACTGCTTTCCAGAGAATGCCAAATGCTCTTCAGCTTAAAAAAAAAAAAAAAAGTTAATTTTGTCTCATGTTTAACATCCACTTATTTGGGTATAGTAACTGTTATGCATAAGAAAGCGGCATACTTTGAGCTACTACTACTTTGCAGGAATATGTATGACTGTGTAGAGCTAAGAAGTCAAATTCAGATTCACGTTGCAGCAGTAGATATAATCAATACTCAGAAAAACACACACTGAATCTTTTGCCTTGCTGTACCATGGTAATCATGGTACATTGATATCCTGTGGGTCGCATTCTGAATGATGCTGTCTAGGGATTATATATGTAGGACCACATCTAAAACGTTCCATGTTGCTGATTAGTCTGGTTGCCATAGGCCGGGTTCCCTCATCAGACAGGTTGGTGGTGTTTTCCATCTCACTCCATTTTCCCTAGGTCACTTGGACAGTGTGATCAAGAAACTAAAGACTGAAAGATGCTTAACTAAATTTTGACCACGGCTCTTCTGGTAACAAGAAGCATGGTTAACAGAATGTCATAAAATCATAGGATGGTTTGGGTTGGAAGGGACCCCAAGGATCATCAAATCCTCCTGCCACAAGCAGGGCTATCAACCTCCGGAATGCCCACAAGTTCTTTTTTTTTTCATCTGGAATTACCAACAAAAACCACCAGGTTTTTGTGCCAATATGTCCTTAGCCTGAAATTTGAGTGACAGTTGTTACTGTCACTGCTTTGTCAGCAGCAGCAGAGAAAAAGAGTAGAACAGATTTGGCTGTTGGCTTAGCATTTCTGTAGTTCTTATGCCTTAGATCATAGCTCCCTCAACTTAGTAACTAAGGAATCCTGGCTCTCTCTTAGCTGCCTTGAGGTCTATGTGAAATGCTTTTCTGGGTCAGAATTTTGGTGTCATTCTCAGGTTCGTTAAAAAGGCTGACTTTTTTCCATGGAGGATATTGTTACTATGGCACTACAAATTCTCATAAACTCATTTGATTGAATAACTTACGATTTATGCTGAGTGCCTTTGAGCAGGACCTTGCTGTAGTCTGTCCAATTCTAGGACTCTCTGAACAGCCAGCCAGCTAGCAGCAGCTCAGTTCGTACCTGGATCAAACACCCTTGTTGTGATAACTGGATGCTTTTGCTTAGAAGAATAGGCAGTGTCATGTGATTGCCGTATGAGTGATGTAGACTCATTTCTTGTTAATTCTGTTGGGCAGAAGCTTGCTTAAAATTGGTCAAAGTTGCAGTTCTTTGAGAAGAAATGTTCCTAAGGGCATTCAGTTCCTGGACACTTCTTGGGGATGCTGCTGTACTTCAGTGAAGTGTAACCAGAAGGCAGAGAGTACATTCTGCTTAAGCAGCACGAGAAAGTGGGTATCAGTGTCACCTCTACCGAACCAAATTGTCCATCAGCCAGTAGAAAATGAAAGTTTTCAATCTGAATGCAAATGCTGATTTTGACGTAATGCTGACATAAGCAGATGTAGGGCAGCAGCATGTGCTAGGCAAGCATCAGTCAGTGCCTTGGTAGTAATTCTGAGCAGGCTGCTCACTTGCCATGGTTTTAGACAGTTTATTTATCCTGAGAATTATGACATCCCCTTGGGAAGCTGCTTTTGATTGTACCAGATATGTCTAATCTGGGTAAAAATCTCATATTCAGGCTTCAAAAATGTGTGTGTGAAGGTTAATTGAGCTTGAACCTTCATTAAATCCATTTGTATTTACTGTGCCATGAGGGCTTAAGGATGACGTCTCATGCACTGGGAAAGGTTCTCAATTTAGATAAAGTAACTATATTTAATAGTTAAAAGAGTACTGCTCGAAGCTACTCAAATAGGAAGGTCTTTGGGCAGTGGTTTATTGAGTTGCTTTTAAAATCTAATATCTTCTTCTCTGTCATTTCTTGAAATATCCAG
Seq C2 exon
ATACTGGCTGCTCTGCAGAAGGATAACCGGGAAATGGAGAAAGGAAGTCCTTCACTTAAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546:ENSGALT00000025058:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.345
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(19.7=51.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]