MmuINT0157274 @ mm10
Intron Retention
Gene
ENSMUSG00000029192 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:MGI Symbol;Acc:MGI:1098708]
Coordinates
chr5:36490604-36495276:-
Coord C1 exon
chr5:36495018-36495276
Coord A exon
chr5:36493115-36495017
Coord C2 exon
chr5:36490604-36493114
Length
1903 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TGTCTTCTCTGTGATTCCAGGTG
3' ss Score
9.17
Exon sequences
Seq C1 exon
GATTTTCACCTTGTACAGTAAGTCCCTGCCCTTGGACTTGGCCTGCCGCATCTGGGACGTATTCTGTCGAGATGGAGAGGAATTTCTCTTCCGCACAGCTCTGGGCATCCTGAAGCTTTTTGAAGATATCCTGACCAGGATGGACTTCATCCACAGTGCCCAGTTTCTGACCAGGCTGCCTGAGGACCTGCCCGCAGATGAAGTGTTTGCAGCTATCTCCACAGTCCAGATGCAAAGCCGGAACAAGAAATGGGCACAG
Seq A exon
GTAAGCGAGTTTGTAGCACAGCCTGAGACTGAAGCACTGTGTTGCTCAAAATAGTGCTCAGGCTGGAGGTGCGCAGCCTGGTGCCGGGCTGGGTTCTGAGAGCTGCAGGAGTGTGAGTAGGAAGACCGCCTCCATTCTGAATGTCTGCAGGACTCTGCCGGGATGCTCCGCTCCTCCCTAACCATTCCCTTTCTTATTTTCTGTGTGTATGACTCTCTGAGGGAGGAGCCGTGTATGTGCCCCACAAGAGTGTGTAGGTCAGAGACAACTCTTGGGAATTGGTTCTCTCCTTCCATTGTGTGAGTCCTAAGGCTGAACTCTGGCCTTCAGGCATGGTGGCAAGTGCTTTTACCCTCTGGGCTGTCTCAACAGCCCAAAAGTTGACTTTTGGTGAGGTTTGCACATGCACACCTTTGAAAATCTGGAAGACCACTGACTTGCATGCTTTATGTGAGAGAATTGCCCATGAATGATAGTCCAGCAAAGCAGTTAAAAAGGTGTGCACAGTCCTGCTCATGTGCTGTCATCAGCGATCCAGGAACAGAGGAGAGCCTTTCTTTGATTAATAAAGAACAGTGTGGCCAGGCGTGGTGGGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTTAGTTCTAGGCCAGCCTGGTCTACAAATTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCGAAAAAAAAAAAAGAAAAAAGAAAAAGAATAGTGTGACTAGAAACATGGGGTCCTGGCTCTGACGCTAAGCTGAGAATTTAAGATGTGGCAACAGAGCCTGAAGATAGAGTCACTTTGAAAGCTTTGTGGGAGGCCTGTGGGAGGAGTTTTGGAATCTTCCGACCTATCGGTTATGCTGGTTTTGTGGATCCAGATGGAAAGGCAGGCCTGCCCATTCCTGACTGCCTGCTCACACAGCCACAGCTGCCCATCTTCCACAGTGTTTTCAGAGATAGCATGGCTTATGCCTCACCCACAGCATGCAGAAGGATTTAGTCAGTCCAGGTTTTGGTTTTTGTGTTTTAGGGATTAGGTTAGAACTAGAGCGTGGGCCATTTGCAGTGAGACACTGGGTAGTGATAGCAGGTAATCTGATGGTAGTGGGCACTGGAGCGTTCTTGCAGCTCACGTGGTTCTCACCGGGACATGCACATTCATTTCAACTCTGTGCTGAGTGTATGGTAGTGCAGGCTTTCCACAACACGATACTGTAGGCTAGGTTAGCAGTCATGCTTTTTTGAAGGGAAAGGGTGCTTTTGTCTGCTATTGCTCCTTTTATCCAATTTTCTTGAGCCTCACTTAGTAGGTTTCTGCTTCACTCCCATCACTTGTGCTGCAAAGTAAGTCCTGTGCTGTTGGGATTCCAGGGCTTTGGAACTGGACAGGCCTTTCCACCGGTGTATTTGACAGCAGTCCCGCACCCTCACGGGCACTGACCTTCCTGATTGGGTGGATGAGATGAGGAGGAGATGGCAGCCCTGCCTTACAGAGGCTCTGCTTGGCACACAATGGGTGTGCAGCAAGGGAGCCTCTGGCTGTCACTGCTGCTGTTAGGCAGCAGTACAGTGGGATGCTTTGGAAAGGTGTCAACCAAGAGCTGGGAGAGCAGAGGGGGCACAGTCATCTCAAGACTGTCACACCTCTGGCCAGCTTCCCAGTGAGGGACCAGCTGTATGTGCACTAGTGGAAGGGTCTTGTCTGAGCCCTGGGGAAAGCCTGGGCCTCAGTGCTGTGCTCAGGGGCTAGCAGGCAAGCATGTGGGGCTTGGGGGTGGGGGGCGGTGCTGTGAGATGGCTGCTGCTTTTCTGCTGACTCGATGAGATTCTCAGGTCTAACCAGTGTTGTCTTCTCTGTGATTCCAG
Seq C2 exon
GTGCTGTCTGCACTGCAGAAAGACAGCCGGGAGATGGAGAAAGGAAGCCCATCCCTCAGACACTGAGGCTCAGGGTAACTCACTCCCACCGGTCAAGAAGCAGAGCTCAACATGGCACCTGTGTGCTTTCAGACTGAAGCCTGCCTGCCAAGAACAGGGGCTCTTTCCATGTTGGATTTCTGATGCTGAAGTTGGCCTTACAACAAAACAGAATTACATCCAGGTTTAGCCTTAAGCAGCTCAGTGGGCCCATGCACTGGCATTGGTCATGGCTAGCCACTGCATTTTCTACATGGGTTCAAGAAAGGGCAGGCTGTCTCCTTGAACCTTTATTCCAGCAGCAGTTAATTAAATTGTGATGCTATTATGCCAACTACTGGAAGGTACATTACAATCTTTCTTAGCCAGGATGCATGAGAAATGTTATTAGGAAACCTCAGAGTTGTTTTTGGCCCATATGCTTGTAAGAAAGGAATTACTTAGTTACTGAGATAATCTTTCCAGAGATGAAAGGTGTGTTTTAAATCTCCCTATCAAGGACATTGTAAGGAAGATGGGCCCTTGCAGGGTAGTTGCTGGTGAATCTCATAGGCTCCTGGGAACGCACCTGACTTTTGTGCTGACATTGACCCATTGTTGCCTTGACACTTGATAGCAAGAAGGCTGAGAGTTCATATCAGGATCCTACTCTGCAAAGGAGCACTCATTGCATCTTGGGAGCTAGAGTGGTTGGAGCAGGGAAGCCATATGCTGTGAAGGGACAGAGACAGGCTCTGTAAAGAGATAGGAAGGACGAGACTGCAGAGTTTGCTCCTCTTTAACCTGCTTGCTTCTGGGGAGGCTGGGCATGGCAGCCTCTGAAAACACCATTGTGTAGGAGATGGCTTCCTTGCTTTAGCTGAATGTCCCTTTTTGCCTTTGTCACCTGAGTAGCTGGATCCCTTCTAAGTGCCAGTGATTCTCCCCTGTCCCCGTCTGGCTTTAGAAATGAGTTCCACGCACTGCTATAAGGACAAGAGTAAGGCAGCCTTCCACCCTCTGTGTCCTGAGCCCTTCCCCATTGCAGCTGATTCCTCTCAGTTCATTGGTGAGGTGCTTGTTGCCCTAGCTTTTCCTTGACTTGAGAACTTTGTATAAGAAATTTTATTTTCCAGATTCACAGAAATGAACAGTTTCTACGTAGAGTAGAACAGTCCAGTATCTGTGGAAACTGGTTACCTTCTGATATCCATTGGCATTCTGGTTCCTGAGGGTGCAGGAAGGCCAGGGTTGAGAATGTATTTTCCAGCAAATCCCTGTGTGGTCTGTAGTCCACAGCCCTCCACAGCCGTACCTCCCACCCCCAGAACTCACCCTTTCCATCTCTGTGTTTCTGAGAGCTGTGGGGGAGCCCTTGACTGATTACAGCATGTGGCAGGGAGGCTTGGGGTCAGCCTCATGGCGCTGTGTTTGCATGGGTTCCCTTCATCTGCTATGCCTGTTGGTGACCGTCCAGTGTATCTGCGGGCTGTCGTATTTGTGCTCTTCACCCCATGCTCTCACTTTCCTCTTTTCTTGGAGTCTCATTTGTAGTCTGTGACTTCTTCAGGGAGGCCACAGAGCACCCTCCATGGAGCTCTCTGCCTTAGTGTGAAAGGCTGATGTCTGACCTCTTGGAGGAGGATGTCTTCACAGCCATCCATGGCCTCCAAACCCAGCCATTCCTGACATCAGACACTGAATGTAGCCCAGGCCCAGCTGGCCATAAGATGCGCACTACCCAGCCCTGTCTGCTGTCCTTCCTTGCAGATGTGTACTGAGTTTTCTCCCACAACATGGGCATCTGTTCTCTCAAGATGTATATATTTTCTTACTGTACATAAAGACATTCCTTACGTCATACAGAAAGTGTTGTGACAAGGGGACTTGGGCACCTTGTTGTGAATGCCATTGTGGGATTCTCTGTGTTCACAACCCAGCCCTTACCTTTTCTTGTTTGACATAAATCTGTGGGCATGCATGAAGTTCTCCAACAAGACTCCATGCCAGCCGAGCACTGACTGCATCTCTAGTCCAAACAAGGTCTTTATAGACTGACTGGGACTTGTGTGAGCCTGATGTACCCTCCTTCGAGGCTATACAGTTCCACGTTCCTCTACTTTGAGGGCGTCTCTCATACTTCTCTCATACTCCTGTTTTGGCAAACTGGAAACTGACCCTGCAGAGGTCTGTACCTCCCACCTCAATTGCCATTGACTTTCAGTCCCAAACTTGAGGGTGCTGGGCAGCTGGCACTCTGGAGGGAGCTTGCAGGAGAGTTCCTGTCACCTTGGGAGCAGTGCTTACTTCAGAGGTACTTCTAACTGCTCAGTTTGCCAATAGGAAACTCCTGATAACACTTGCTACATATCATGTTTTAATTGCTTGTACAGTTAACCTTTAATTTTGTTTAGTAAAGTGTATCAAACTAGGACTTTTTGAATTGTAAATATGTGGTTTTATTAAAATAAAGTCATGTAAAATTGTTACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029192:ENSMUST00000146430:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.383
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(19.7=51.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGATGAAGTGTTTGCAGC
R:
TAGCCATGACCAATGCCAGTG
Band lengths:
342-2245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types