BtaINT0145424 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005493 | TBC1D14
Description
Bos taurus TBC1 domain family, member 14 (TBC1D14), mRNA. [Source:RefSeq mRNA;Acc:NM_001099176]
Coordinates
chr6:118276406-118278504:+
Coord C1 exon
chr6:118276406-118276524
Coord A exon
chr6:118276525-118278421
Coord C2 exon
chr6:118278422-118278504
Length
1897 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CTTTTTTTTTCCCTATCAAGAAA
3' ss Score
6.48
Exon sequences
Seq C1 exon
GAATATGAAGACAAGGCTGGACGACCTAGCAAGCCTCCCTCTCCGAAGCAGAATGTGAGGAAGAATCTTGACTTTGAGCCTCTCTCCACCACCGCACTCATCCTGGAGGACAGGCCAGC
Seq A exon
GTGAGTCTGACCGAGAGTCTGTAGAGAGTTTGTTCTGGGGGATCAGTCCGCTTGCTGGTCACCATTTCATTAGCAAAGGACTGGGTCCTGAGGGAGAGAACACGTTAGCACAACACTTGCTAAAAGCACGGGCTCCTCCCCGTCCCTGTGCTGGTGTGCGTTCTGTGTTATAGCACGACTGACTTGGAAACGTTTCATGTAACGTAGAAGTGGGTTTTTTTAATTAATTACTTTTTATTTGTGGCTCTGCTGGGTCTTCATTGCTGCTCAGGCTTTCTTCCCTGGACGTGGAGAGCAGAAGCTCTTCTCTCGTTGCAGGATGCGGGCTTCTCGCTGCGGTGACTTCTCTCGTTGCGGCTCCTGGGCTCTAGAGCACAGACCCAGTAGCTGTGGCACAGAGGGGTGGCTGCTCCGTGGCATGTGGGTCTTCCCTGGATCAGGGGTTGAACCCGAGTCTCCTGCATTGGCAGGCAGATTCTTTACCACCGAGCCACCAAGGAAGCCCTAACCTAGAAGTTTTAACCCGGATTTTCCGTTAAGTGACTTTAATTTAGCATGTCTAAACACTTGCAGAACTGTTATTATAGACTGGCTTGTAACTGTAAAAAACAGCAGAGCGAACACCCTGCAGAGGGTGTTCCGGAGGCGCCCTAGACAGTGGCAGGACGGTGCCTGCATTCGCCTGCTGCTTCTCTGGGACGTGCTGCAGTAAACGGGCTGGCTGGGCCTAGCAAGGGTCTTCCCCTCCAACCTCTGGTTTGCCTCGAACTGACGAGGAGATCGGTTTTGGTGACTGGCCTGCGGATCGTGTTTGGAGACCCTAGTTAGATAAAGGGATTGATCCATCGTACCAGGCCAGAGCTTATCTCTAGTTAAGCGTCAGGTTTCCATAGAACCCTGTTTTTGAGCAGAAAGATTCCACAGCTTTTTTTTTTTTTTTTAAATCTTAAGAGAGATTGCAAAACGCTGAGCTAGAATTTCTAAGGTCCCTGCCAACCCTGACATTTAAAATTGATGAAGTCTGAAGAAGCAATGTGTGTCTTCCAATGTTAATTTTTGGTCATTGGACATTGTGGATGTATGGGTAGATGGGAAGAGAAACTCAGACACGGCGGACTCACAGGTAGGTAGGGACTTAGGGACTGTGGGTAACAGCTGCCACCCTGTGAAGCTCAGCCCTTGAGGCACTGCCTGAGACGCGAGCTGTTGCCCTGCAGTACAGACGGTCGTTCAGCGTAGCGCGGGGGGCGCGGGGGACACTGCGAGGCACACAGCCAGCAGACATGGCCGCCCGCCCGGTTCTCCAGGGCCAGCAGAGTCACCAGCACGTTTCGGAAAGATAACGTGCCTTTTATTATTTTAACCAGAATTAGAAGATGCCCACCACATTTAGGTGTTTAGAATTGCTGTATGAGTCTATGTGTGTGTGTATGTATATATATAGATATACATATGAGACAGGTGAACCGCACAGCTAGTGTGAAACTTGCACACTGAAAAACAGGCCAGGGAGTAGATTCGTGCATATACGTAATATACACCATTGGAGTACTTCACGGGTGACTGCTGACAGTGATTAGTGCATGTGGTCAAATCAGTTTCTTTGGAGACCTGGGGTGAAAAAAGACACTGAAAGATTTAAGTGTTTATCTCTGTTGGATTTGTGGGTAATTGCTAATTTCTTCTTTTTGCTAACCTTCAGATTTCAAGTTTTTAAAAATGAGCTTTATTTTACTTTTGTAAAAAAAATATATTTTTCGGTTTTAAAAGAGCTGTGTCTTTATCATCTAACAAAGGTAGTTTTCGTCTTTGAGCTTCTCATTTTTTAGTAAATGATGTTCCAAGTTTCTCTTTAATATTTAAAATGGTGGAAAAATCTTTTTTTTTCCCTATCAAG
Seq C2 exon
AAATCTCCCAGCGAAGCCAGCTGAAGAAGCTCAGAAACACAGGCAGCAGTATGAAGAAATGGTGGTTCAGGCCAAAAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005493:ENSBTAT00000039389:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=0.793
Domain overlap (PFAM):
C1:
PF085986=Sds3=PU(29.3=67.5)
A:
NA
C2:
PF085986=Sds3=FE(30.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGACAAGGCTGGACGAC
R:
TTGGCCTGAACCACCATTTCT
Band lengths:
190-2087
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]