HsaINT0164006 @ hg19
Intron Retention
Gene
ENSG00000132405 | TBC1D14
Description
TBC1 domain family, member 14 [Source:HGNC Symbol;Acc:29246]
Coordinates
chr4:6995911-6998134:+
Coord C1 exon
chr4:6995911-6996029
Coord A exon
chr4:6996030-6998051
Coord C2 exon
chr4:6998052-6998134
Length
2022 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CTCATTTCTTTCCTGTCAAGAAA
3' ss Score
4.94
Exon sequences
Seq C1 exon
GAATATGAAGACAAGGCTGGAAGACCTAGCAAGCCACCCTCTCCAAAGCAGAATGTGAGGAAGAATCTTGACTTTGAACCACTTTCCACCACCGCACTCATCCTCGAGGACAGACCAGC
Seq A exon
GTGAGTTTAAGAAGACTCTCTTTAGAGTGTTTGCTTTAGGAAATAAGTACAACTTGCTAAGCAGCTTTTCATTAGAGAAAAACTAGGGTCAGAAAAGGGGAGAAGAGTAAGCCAGAATCACTTCTTATTCTCTATATTAACATGTGTTCTGTAATTATATTAAATGACCAATTTGGAAAACTGTCCTATAGCATAGAAGTTTTGACCAGGATTTTCCGTTCAGGTAATTTTTCTTTTTACTTTAGCATTTAAAAATAAGTTGTCAGCTGGGTGCAGTGGCTCACGCCTGTAATCCCTGCACTTTGGGAGGCCGAGGCGGTGGATCACTTGAGGTCCAGAGTTGGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAATACTAAAAATACAAAAAAATAGGTGTGGTGATGGGTGCCGTAATCCTAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGCTTGCAGTGAGCCAAGATCACACCATTAATTACACTCCAGCCTGGGCAACAAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAAAAGAAGCAGTGTGTCTTCTACTATTTTCTTGTCCTTGAAAGTTGTATGCTGGGGAGAGAAATGGAGGACTGGAAAGTTAGAGGCCATCAGGAAAAGACTCTGGCCTTTGAAGTCCAGTCGTTTTCATGCTCTGAAAGGTGAACTGGCGGACTCTCCTGCAAGTGATGGTTGTTTAAAATGTCCCAGTGAATGTGGGTCCTGTTGTGTGAGGGACACAGGCAGCCAGACACTCCTGCTCTCCTTTTACCCTAGTGCCAGTACAGTTACAAGCACGCTTCTGAAAGAGAGCACGAATTGTATTTTTTTAAATGGGTTTTGAAGGTATACCAAGATGCTTAGAACTAAGGTGCACATCTGTGTATATGTCAAAAAACAAATGAACCACGTAGCTAGTATGAAATCTGTTCACTTTAAAAATCTGGTCAGGAAATGTCTTCATACATACATGTAACAAATGCTGTTAGGGTGCCCTGCCTCAAGAATTAGGTGTTGACAGTTATTAGTGTATTGCAGTCAAATCAAAGTTTCTTTGGAGTGTGGGGTGAAAATATACCAAAAGATTAAGTGTTTATCACTGTTGCAGTTATGGATAATTGTTATTTTCTTCCTGCTAATCTTTATCATTCATTTTTCCTTTCTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGCACAGTGGCGCGATCTTGGCTCACTGCAACCTCTGCCTTCCAGGTTCAAGCGATTCTCCTCCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACGTGCCACCATGCCCGGCTACTTTTTGTATTTTTTAGTAGAGACAGGGTTTCAATGTGTTAGTCAGGATGGTCTTTATTTCCTGACCTCGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTGCAGGCGTGAGCCACTGCTCCCAGCCCATTCATTTGTTTTTATTTAATTAATTAATTTATTTATTTTTTGAGATGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAAGCTCCGCCTCCTGGGTTCACACCATTCTCCTGCCTCAGCCTCCTGATTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCTAATTTTTTGTATTTTTTAGTAGAGACGGGTTTCACCATGTTAGCCAGGATGGTCTCGACCTCCTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTGCAGGCGTGAGCCACATTCATTTGTTTTATAGTGAACTTGTTTTTGTTTTTGTAAGAAAGCATTATAAAAGTTTGTGAAAGAACTGTGTAATCTTAAAAAAATGAGTTTTTAGTGTTTGAGCTTTATATTTTTTAGGAAATTATGCTTCAGGTTTTTTCTGAAAGACTTCTATGCGGTATTTATAATGGTGAAAACTCATTTCTTTCCTGTCAAG
Seq C2 exon
AAATCTCCCAGCAAAACCAGCTGAAGAAGCTCAGAAGCACAGACAGCAGTATGAAGAAATGGTGGTTCAGGCCAAAAAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132405-TBC1D14:NM_020773:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=0.834
Domain overlap (PFAM):
C1:
PF085986=Sds3=PU(28.4=62.5)
A:
NA
C2:
PF085986=Sds3=FE(31.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)