HsaINT0164006 @ hg38
Intron Retention
Gene
ENSG00000132405 | TBC1D14
Description
TBC1 domain family member 14 [Source:HGNC Symbol;Acc:HGNC:29246]
Coordinates
chr4:6994184-6996407:+
Coord C1 exon
chr4:6994184-6994302
Coord A exon
chr4:6994303-6996324
Coord C2 exon
chr4:6996325-6996407
Length
2022 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CTCATTTCTTTCCTGTCAAGAAA
3' ss Score
4.94
Exon sequences
Seq C1 exon
GAATATGAAGACAAGGCTGGAAGACCTAGCAAGCCACCCTCTCCAAAGCAGAATGTGAGGAAGAATCTTGACTTTGAACCACTTTCCACCACCGCACTCATCCTCGAGGACAGACCAGC
Seq A exon
GTGAGTTTAAGAAGACTCTCTTTAGAGTGTTTGCTTTAGGAAATAAGTACAACTTGCTAAGCAGCTTTTCATTAGAGAAAAACTAGGGTCAGAAAAGGGGAGAAGAGTAAGCCAGAATCACTTCTTATTCTCTATATTAACATGTGTTCTGTAATTATATTAAATGACCAATTTGGAAAACTGTCCTATAGCATAGAAGTTTTGACCAGGATTTTCCGTTCAGGTAATTTTTCTTTTTACTTTAGCATTTAAAAATAAGTTGTCAGCTGGGTGCAGTGGCTCACGCCTGTAATCCCTGCACTTTGGGAGGCCGAGGCGGTGGATCACTTGAGGTCCAGAGTTGGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAATACTAAAAATACAAAAAAATAGGTGTGGTGATGGGTGCCGTAATCCTAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGCTTGCAGTGAGCCAAGATCACACCATTAATTACACTCCAGCCTGGGCAACAAGAGCAAAACTCCGTCTCAAAAAAAAAAAAAAAAAGAAGCAGTGTGTCTTCTACTATTTTCTTGTCCTTGAAAGTTGTATGCTGGGGAGAGAAATGGAGGACTGGAAAGTTAGAGGCCATCAGGAAAAGACTCTGGCCTTTGAAGTCCAGTCGTTTTCATGCTCTGAAAGGTGAACTGGCGGACTCTCCTGCAAGTGATGGTTGTTTAAAATGTCCCAGTGAATGTGGGTCCTGTTGTGTGAGGGACACAGGCAGCCAGACACTCCTGCTCTCCTTTTACCCTAGTGCCAGTACAGTTACAAGCACGCTTCTGAAAGAGAGCACGAATTGTATTTTTTTAAATGGGTTTTGAAGGTATACCAAGATGCTTAGAACTAAGGTGCACATCTGTGTATATGTCAAAAAACAAATGAACCACGTAGCTAGTATGAAATCTGTTCACTTTAAAAATCTGGTCAGGAAATGTCTTCATACATACATGTAACAAATGCTGTTAGGGTGCCCTGCCTCAAGAATTAGGTGTTGACAGTTATTAGTGTATTGCAGTCAAATCAAAGTTTCTTTGGAGTGTGGGGTGAAAATATACCAAAAGATTAAGTGTTTATCACTGTTGCAGTTATGGATAATTGTTATTTTCTTCCTGCTAATCTTTATCATTCATTTTTCCTTTCTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGCACAGTGGCGCGATCTTGGCTCACTGCAACCTCTGCCTTCCAGGTTCAAGCGATTCTCCTCCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACGTGCCACCATGCCCGGCTACTTTTTGTATTTTTTAGTAGAGACAGGGTTTCAATGTGTTAGTCAGGATGGTCTTTATTTCCTGACCTCGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTGCAGGCGTGAGCCACTGCTCCCAGCCCATTCATTTGTTTTTATTTAATTAATTAATTTATTTATTTTTTGAGATGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAAGCTCCGCCTCCTGGGTTCACACCATTCTCCTGCCTCAGCCTCCTGATTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCTAATTTTTTGTATTTTTTAGTAGAGACGGGTTTCACCATGTTAGCCAGGATGGTCTCGACCTCCTGACCTCGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTGCAGGCGTGAGCCACATTCATTTGTTTTATAGTGAACTTGTTTTTGTTTTTGTAAGAAAGCATTATAAAAGTTTGTGAAAGAACTGTGTAATCTTAAAAAAATGAGTTTTTAGTGTTTGAGCTTTATATTTTTTAGGAAATTATGCTTCAGGTTTTTTCTGAAAGACTTCTATGCGGTATTTATAATGGTGAAAACTCATTTCTTTCCTGTCAAG
Seq C2 exon
AAATCTCCCAGCAAAACCAGCTGAAGAAGCTCAGAAGCACAGACAGCAGTATGAAGAAATGGTGGTTCAGGCCAAAAAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132405:ENST00000409757:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=0.798
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains