RnoINT0147943 @ rn6
Intron Retention
Gene
ENSRNOG00000006400 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:RGD Symbol;Acc:1309993]
Coordinates
chr14:79407476-79409712:+
Coord C1 exon
chr14:79407476-79407594
Coord A exon
chr14:79407595-79409629
Coord C2 exon
chr14:79409630-79409712
Length
2035 bp
Sequences
Splice sites
5' ss Seq
CGCGTGAGT
5' ss Score
8.4
3' ss Seq
TCTCTTTATTTCCTGTCAAGGAA
3' ss Score
7.18
Exon sequences
Seq C1 exon
GAATATGAAGACAAGGCTGGAAGACCAAGCAGGCCGCCCTCTCCAAAGCAGAATGTGAGGAAGAACCTGGATTTTGAGCCACTGTCCACCACAGCGCTCATCCTTGAGGACAGACCCGC
Seq A exon
GTGAGTCTGAGGAAGAGCCTCTGTGCTGTCTGCTGTGGGGATACACGCTCCTTTTCTGGAGGCAGGAGAGGGGAGAAGAGTGTCTCTTACTACCTCCTTGTTGGCTTTCACTCAGTGTGACATCTCATGGTGATTTAGGAAACTGTCCTGTGTCATAGAAATTTAACCAGACTCGTCCTTTCAGGCAGTATTTGCTTGTAGTTTATTGTCCAGGTTTGCATTGTGTAGCTGCTGTAAGGGCGAGGCTAGTTTGGGAGTACCAGGAACCCTGCAAGCATGCTTCATAGTAGTGCTTTGGAGGTGCCTTTTTTGGTTGTTTTCGGTATCTCTTAGACTTGCCTGCGGAATTTCTTGGGTAGTTTGAGTCAGGATTCCTCTCTGGGCCTAGAATCCCCACTGTGTGATGAGGCAATCATGCTGGGAGATGGGACTCATAGATGATCTCATTACTGAATTTACACACAGCAGTGTGTCAGGGAGAAGGTTTCCCACCTGAGGAAGAACAAGAACGACAGGTTGTCCTGCCCTGGGCTAGTTCATTCCAGCCTCCTGTCCATCCCTGATACTGAAAACCATGAAGGTCAGTAGGTAAAGAAAGATGCTTGCTGCCCAGCCTGCTTCCTGGCATCTGAATGGTGGAAAGAGACAGCTGACTTCTGCAAGTTAGCCTCTGACTCACACAGACACAGACACACACACACACACTCACTCACTCACACACACTCACACTCACATGCATTCACACACACACACACTCACACTCACTCACACTCACACACGCACTCATACACACACACACTCACATGCATTCACACATACACACACACACACACACACACACACACACACGGAGGAGGATGGAGAGGAGGAAGGACTGAGAAGGAAGAGAAAATGTAATTAAACAATTAAAATGTGAAGTCTAATGAGTATATCTTCAGGGTTGTAGAAAACCCTGAAGAGAAGGTTGGAACTCTAGGGTAAAGAGACCAAGCTCTCTTAGTGTGCTGAAAGGTAGACCAGGCTGGCCACCTTTGGCAGATGTCGGTATTGCAGTCTCTCACAGGGAAAGTGGTTATAGTACTTGAGGAATGCAGGCCAGGTGCCATCACATCCCATTAGGTCAGCTGCCAGAGTCTACTGGCATTCTCTATGGGATCCATAGAGCTCCTGTGTGCGTTTGCATAAAACAGAACAAAGGAACTACAGCACTATATAGATTTTTGCTCTCATTGCTGTGATGAACACCTGACCAAAAGAAAAAAAACCTCAAGGAAACAAGGCTTAACTTGACTCCAGTTTGAGGATATAGTCCATTGTGGTGGAGAAGGCATGGCGGCAGGAGGTGCTGGTCACATGGTATCAGCTGGCAGGAAGCAGATAATGTTGGTACTTCTCTTGCTTCCTCCCAGTCTTTGGAATGGTGTCACCACATTCTTTCTTTAAACCAGTCTGGAAATACCCTCACAGGCACACCCAGGGAATGTTTCTTCAGGGGTTGTAGCTGGCAGTGTGATTAACCATCATAGGAGCTGATCTGAAAGAAGCTAAGCAGTTAAGCTGCCATATAATATACACTGTGAGATCATCCTGATGCAGGGATCAGATGTTGACACAGCTTTGCAGTATGAACCATTTCTTTGAAGAATAAGTTGACTTCTTTTTATGAATCTTTATAACCCAGTGTTTCACACTGAGGAGCTTGCTTTGTCCGAAATGTCTTTGGGGGGGGGGGATAGTTCAGTGGTAGAGCCCTAGCTTGACTAGTGTGTGTAAGGCCCCATGCTCAGAGCCCAGCTGAGCAAGGTAGCACACACCTGTAGTCCAGCACTTGAGAGACTAAGGTAGCAGGGTCTCCTGGGCCATGTAAATCTCAACAAAACAAATGTAGTTTCAGTGTCTGAAAAACTGTAGCTTTAAGAAATGGATTTTAAACCTTGGGTTTTAGAGATTTTATGCAATAATGCTTCAGGTGTTGCTTTTCCCTCCGACTTTTATCTAGTTGTTAACAGTGCAACTCTCTTTATTTCCTGTCAAG
Seq C2 exon
GAATCTCCCAGCAAAGCCAGCTGAAGAAGCTCAAAAGCACAGACAGCAGTATGAAGAGATGGTGGTGCAGGCTAAGAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006400:ENSRNOT00000058414:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.725 A=NA C2=0.841
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]