GgaINT0069291 @ galGal3
Intron Retention
Gene
ENSGALG00000015546 | TBC1D14
Description
NA
Coordinates
chr4:82873408-82876178:+
Coord C1 exon
chr4:82873408-82873526
Coord A exon
chr4:82873527-82876095
Coord C2 exon
chr4:82876096-82876178
Length
2569 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
GCTTTTTTTTTTAATTTAAGGAA
3' ss Score
8.16
Exon sequences
Seq C1 exon
GAATATGAAGAAAAAACTGGACGAGCTCACAGACCACTCTCTCCTAAGCAGAATGTGAGGAAGAACCTTGATTTTGAGCCACTCTCCACTACTGCACTTATTTTAGAGGACAGACCAGC
Seq A exon
GTAAGTTTTGGGAAACATCACAGTGAGGATCCCTTCAAAATGGGGCTAGCAAAGCTGCTCTTACAGTGTGTATTTGATCTCTCCAATTCAGACAGATGATTTTAAATTTAAATACTTTTGTTTCAGGCTAATGAATATGCAAGTGTGATAGTTATGGGGAAAATTATTCAAACAGAAGTAATTTTATAGTAAAAACATATTTTGAGCTTTAGTTTTGAATAACTCTAAACACAAGGGATTTTTATTTTCCCTTTGAGAGCATAAAGATAAGAATGAAGCTGATAGAAGCTACAGAAATTGAGAAGCAAGGATACAGTGTCTTTGTTTGCATGGAGAAAGACCAAACCCATATAAATAATGAAATGATATAATGATTGTTCTGCAGTGGAATCAGCATCACGTGATAAAGGTTGTCAGGAACTCAAGTTCTTTGATGCTTTTGTTTCAGTAATGAGATTATTGCACATGCAGACTAACTCTAGAAAGATTTATGTGTAGCTGCTTTCATCGTTTTTTACCCCTGACTTTCAGAAATTCGGTTGCATTTGGTCAATTTATGGACAGTATCCAGTCTTGCAGACATGATGTCTGCGTTTTTAATAGAGCAGTGCATTGGTACAAAGAGCTGGCATAACATGGTATATGTTTTCATGAATAAATTTACGTGAAAAATCCTATCAAACTAGTTTAGTAGTAGGGTCATTTAAGACACTTTTTGGTTGGCTGGTAGACTACAAGACTTCTCAGTACACTAAAACAACCTTTGAGGGATTATTTGTAATAGTAAGTTTTCTTGTGTACAGCTGGAAACTGTGCATACTGGCTTATTTGTTTTATTAAAACTTGTCTGTTAAAATCATCCTTTATGTGGCATACTCTGAGACACACAGTATTCAGCTAGATTCAGTTATGGTACATTACAGGATAACATTCAGATTTTACTTCTTTGCTAATGTTGATAAACTGAGGAACTTATAGCAAAAAAAAAAAGTTTGTTTTTTTGAGTTGTAGACAGCTGAATCATGGTTTCTTCCCTCTAATAGAGGAAATTGAGCAACAGTGCCATCCTCCAGTGAATCTCTCTAAGGAATCTTTTTTTATTTTTTTTAGTTGGCTTTTTTTTCCCCTACCTGTTAAGCTTTAAGTAATTTCTTGTTGATTTTCTGCAACAAACAAACAAACAAATAAATAGAGACTTCCAAGAAATGCAGTGAGATGTTATTCCCAAAACAGCTACTCTTGGTTTTGGTCTCACTTGGAGGGCTTAGGTAAAACTCTAAGGAAAAATCAGTTAATATTATGTAGTCTCTTATGTAACTTTAACTGGACTGTGTTGAATCTTAATAGATACATCATTTCACATATGTGATGGTGTCATTAAGAGAGGGAACAAATAATTCAAGTTGCAAGGTTTAAGTTGGTAGAATTTGAGTTGTTTCTTCTGGTTTTCCATTCCAAACTTCTCTTAACTCACACTGTTTATAAGGACTTTGGATTTATGAAGAGGAAACAATCAACTTACTTGAGTGAAACTGGAAAAAGTCATTCTTTATGGGTAACAGTTACATTAATGTGCAGATCAATTTCTTGTGTTCTTGTTACAGTCTTGATTCTTAAAAATATTCATAGGTGTGTAGCATATGGGTCTGCATGCTTAACAGGTAATGTGATTATGTAAATAGTAAAGCATGCTGCTATTGATGATATCTGTGTTGACAGCTAGAAGCTGCCTTATGTCTGAGACCTTACAGGAATACACACATTAATTTTTGTGTTTCTTACTTATTAACTAAAGATACTGACTGACCAAGAAATACAATGCAACGATCAACAAAATACTTATTTACTGTTCTGATGTTTTGGTGATCCTATAGTTGCATGAGGTACATAGTGATTACGTTAATGGTTACTATAATTTGCTTAAAGTGAATGCGATCTGATACAGGAGCATGTGTATTGTATGGTAGAGGTTTTACTTCAGTCACAAATAGGAAACGGCTGTGTTGATCTCAGTGAGTGGAAAATGCACAGAATGGCTACTGGTTGTTGCTGTAGAATTGAGGGGAGGGAGTTAAGCATTCTAAAGGAGAAATGGGATCTCTGAGAACAGAAAGAGGAAGCTGGTGTAGTGAGCCATTGCTGCATGAGTAAAGAAAGCTATGGATGTAGTCCTTCAGTGAGGTACGCAGTGAGTGAATAAGATCTTGTGCTTTATCTGTAGTGCTCAGTTTAAAGTAAAGCTACCAGCTTGTTATGTACCACTATATTCCCTTTATTTATGAAGATTAGTCTGTGGGTTCAGTCGGTTTAATAATAAAAATGCTGAAATTGCCAAACAAAAGGAAATTGCTCAGCAGATTTTGTGTATAGAAGTACTCATAGCTGTTCAAGTGTTCTTTCCTTCTCTTCCGCTGACTCTGGCAAAAAAAATCTTTCCAAGAATCTGTTGGACTACTCCTTAATCAAATATTTTGACATCAAGCAGCATTATGCTTTTTTTTTAAAGTGCCTAGAATTGTCTCTAGATGGACACGGCAACTTGAAATACTGCTTTTTTTTTTAATTTAAG
Seq C2 exon
GAACCTCCCAGCAAAACCAGCAGAAGAAGCTCAGAAACACAGACAGCAGTACGAAGAAATGGTGGTTCAAGCAAAAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546:ENSGALT00000025058:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=NA C2=0.759
Domain overlap (PFAM):
C1:
PF085986=Sds3=PU(34.4=82.5)
A:
NA
C2:
PF085986=Sds3=FE(29.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]