MmuINT0157277 @ mm10
Intron Retention
Gene
ENSMUSG00000029192 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:MGI Symbol;Acc:MGI:1098708]
Coordinates
chr5:36522927-36525048:-
Coord C1 exon
chr5:36524930-36525048
Coord A exon
chr5:36523010-36524929
Coord C2 exon
chr5:36522927-36523009
Length
1920 bp
Sequences
Splice sites
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
3' ss Seq
CCTGTTTATTTCCTGTCAAGAAA
3' ss Score
4.27
Exon sequences
Seq C1 exon
GAATATGAAGACAAGGCTGGAAGACCGAGCAGGCCACCCTCTCCCAAGCAGAATGTGAGGAAGAACCTGGATTTTGAGCCACTGTCCACCACGGCGCTCATCCTCGAGGACAGACCTGC
Seq A exon
GTGAGTCTGAGGAAGAGCCTCTGTCTGTCTGCCATGGGGGTGCGCCTTTCCTGGAGGCAGGAGAAGGGGAGGAGAATGGCTGGGTCTCTTGTTACCTCCATGTTAGCCTTCACTCAGTGTGACATCACATGGTGATTTAGGAAACTGTCCTGTGTCATAGAAATGTAACCAGGCTTTTCCTTTGAGGCAGTATTTGCTTGTAGTTTATTATACAGGTTTCCATTGTGTGGCTGCTGTAAGCACATGGCTAGTTTGGCAGTACAAGGAACCCTGCAAGCATGCTTCAAAGTAGTGCTTTGGGGGTGCCTGGTTTTTGTTTTGTTTTGTTTTGTTTTAGGATAACTCTTAGAGTGGCCTGTGGAGATTTTGGGTAGTTTGAGTCTGAACGCCTCTCTCTCTGGGCCCTTGTATCCGCATTGTGTGATGAGGCAGTCATGCTTGGAGACATGCCTGAAGAAGAAAGTCCTAGCTAATCTAATTACCGAATTTACACAGAACAGTGCATCAGGGAGAAGGTTTCCCACTTAAGAAAGAACAAGAACAACGGCAGGTTATCCTACCCTGGGCTAGTCCATTCCAGCCTCCTGTGCATCCCTGATATTTAAAACTGTGAAGTCAGGCCAGTCATATGGTCAGTAGGTAAAGAAAGATGCTTGCTGCCAAGCCTGCTTCCTGGTATCTGAATGGTGGAAAGAGACTGCTAACTTCTGCAAGTTATCCTCTGACTGACACACACACACACACACACACACACACACACACACACAGAGAAAATAATTAAATAAACAATTAAAATGTGAGGTCTAATGAGGAGTATATCTTCAGGATTGTAGAAAACCGTGAAGAGGAAGTTGGAACTCTAGCATAGAGGGACCAGCTCTTTTAGTGTGCTGAGAGGTAGATCGGGCTGGCCACTTTCCGCCAGTGGCGGTGGTTGCAGTCTCACAGGGAACATGGTTATAGTACTTGTGGAATGCAGGTGAGGTGCCATCACATCCCTAAGTCAGCTTAAGAGTCCACTGACATTCTCTATGGGATCAATATAGCTCCTGTGTGCGGCTGCATAAAACAGCGAAGGAACTACAGCACTATGTAGATTATTGCTCCCATTACTGTGACAAACACCTGACCTAAAGAAAGAAAAAGCTCAAGGGAGCAGGCCTTACCTTGGCTCACAGTTTGGGGGTATAGGCCATCATGGTGGGGAAGGCATGGCGGCAGGAGGTGCTGATCATGTAGCATCAGCCGGCAGGAAGCAGATAATGTTGGGACTTATCTTGCTTCCTCCCAGCCTTTGGAATGGTGTCACCCACATTTCTTCTTTAAACAAGTATGGAAATACCCTCCCAGACACACCCAGGGGAATGTTTCCTAAGGGTTGTAGCCAACAGTGTGATTAACTATCACAAGAGCTGATCTGGAACTAAGCACTTAAGCTGCCATCTAATATATGCTGTGAGGTCATCCTGATGCAGGGATCAGCTGTCGACGCTGCTGCTTTGCAGTAAGAACAATTTCTTTGAAGAATAGGCTGACTTCTTTTTTGTATCTTTATAACCCAGTGTTTCACAGTGAGTGTCATGCTTTGTCAGAAATGTCTGTGTGGGGAGATAGCTCGGTGGTGGAGCCCTTGCTTGTCTAGTGTGTGGAAGGCCCCAGGCTCAGTCCCCAGCTGGGCAAGGTAGCACATGGCCGTGGTCCCAGCACTTGAGAGGCTAAGATAGTAGGGTCTCCTGGGCCATGTAAGTCTCAACAAAACAAATGTAGTTTCAGTTTATGGAAGAACTTTTAAAGAAGTTTAAAAAAATGACTTTTTTAACCTTGGGTTTTAGAGCTTTTATGCAATAATGCTTCAGGTGATTTTTTCCCTCAGACTTTTATCTGGTTGTAACAGTGCAACCCTGTTTATTTCCTGTCAAG
Seq C2 exon
AAATCTCCCAGCCAAGCCAGCTGAAGAAGCTCAAAAGCACAGACAGCAGTATGAAGAGATGGTGCTGCAGGCCAAGAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029192:ENSMUST00000146430:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.716
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGACAAGGCTGGAAGACC
R:
CTCGTTTCTTGGCCTGCAGC
Band lengths:
198-2118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types