BtaINT0145430 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005493 | TBC1D14
Description
Bos taurus TBC1 domain family, member 14 (TBC1D14), mRNA. [Source:RefSeq mRNA;Acc:NM_001099176]
Coordinates
chr6:118288719-118289746:+
Coord C1 exon
chr6:118288719-118288790
Coord A exon
chr6:118288791-118289617
Coord C2 exon
chr6:118289618-118289746
Length
827 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
GCCCTCTTTCCTCCTCTCAGGTT
3' ss Score
11.48
Exon sequences
Seq C1 exon
GGTGGCCCGTACCACGACATGCTGCACAGCGTTTTGGGCGCGTACACTTGTTACCGACCGGATGTGGGCTAT
Seq A exon
GTAAGTGAACCTTTCCGAGATCTCTGACGTTCTCCTCTAGAAAGAAAGTCATGCTCTCCGCCATCTCACCGTAGCGGCAGATGGTGGGTCACGTGCCCCCATTTTTGTGAGCTATGAAAGGCTCACGGTCAATGACTCGCCTCAGTTTCCTCGTAGGGAGATTGAGCTGCCCTGGCTACTCTGTGGCATCCATCTTTTTTTTTTTTTAAAGCCTGACGTATGAGCCTAGTCGCTCAGTTGAGTCCGACTCCTGTTGTGACGCGGTGGACTATATAGCCCACCAGGCTCCTCTAGGTCCGTGAGATTTCCCCAGCAAGAATACTGGAGCAGGTGGCCGTTTCCTTCTCCACAGATCACGTTTCAGTTGGGTTTGATTTTCATGTTTTGCATGTGATTCTTTTTTTTCCCCCAACATTAAATCAAAAAAGCTTTTTAGTTGTAACTGTTTTAAAATTACACTGCTGCGGTTTCTGTGGCTAGTGGACGCGTGCTGGCACGGCTTTAGGGTGACGTGTTCCCTTAGGTGTGCATTTCCATGGTGCCCGGACGCCGGACCTTCCCAAAGGCAGCGGGTCTGTGAGGTGCAGGAGGAGGGTGTGCGAATGAAGGAGTGCACACAGGTGGCAGGCGTGGCAGGGCAGCGACTCTGCGTCAGGATGGGCAGGGCCCTCGAGGCCGTGGGCCTAGCCTGCGGGGGTGGCAGCGGGTGGGGGCAGCGTGGGCCCTTCCAGCGCAAGGGCATGTGGGCTCCTCCTTCAGGGAGACACAGGGGCTGCTCCAACCGCGGTGGCTGCCGGTGGTTTGACCGCCCTCTTTCCTCCTCTCAG
Seq C2 exon
GTTCAGGGCATGTCCTTCATAGCGGCCGTATTGATCTTGAACTTGGATACTGCAGATGCCTTCATTGCTTTTTCTAATCTTTTGAATAAACCCTGTCAAATGGCATTTTTCCGAGTGGACCATGGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005493:ENSBTAT00000039389:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.1=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCCGTACCACGACAT
R:
AAGGCCATGGTCCACTCGG
Band lengths:
199-1026
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]