GgaINT0069297 @ galGal3
Intron Retention
Gene
ENSGALG00000015546 | TBC1D14
Description
NA
Coordinates
chr4:82882790-82884677:+
Coord C1 exon
chr4:82882790-82882861
Coord A exon
chr4:82882862-82884548
Coord C2 exon
chr4:82884549-82884677
Length
1687 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
AACACTTCTCCTTTCTTCAGGTA
3' ss Score
11.21
Exon sequences
Seq C1 exon
GGCGGTCCTTACCATGACACATTGCACAGTATTTTAGGAGCCTATACTTGTTACAGACCTGATGTAGGATAT
Seq A exon
GTAAGTAAACTTCTTCATCTGGGATGGGGAGGGAGAGTGAGGGGGAGGGAGAATTCTTAAACAGGCCTTCATAGACCAGTATTAAGTTATTTTGTGACTAACTGTGGGGTTTCTGTATGCTTATATTCCAACACACGCTTGAGAAGTGTGTCTCATATAATTGTTCTGTTGCTAAATTTAAGCTTTTTAACAGTTTAAGTCATTGAAAAACTCAAAAGTACATGTTTTTGTACTTGAAAATTGGAGTTGAAAGAGAAGATTTAGCTAATTGGTCCTTTGAAGTACATGCTGTTCTTAATGGCAGTGTTACTGAGATTGTTCTGTTGTATTGTTTGTTACTCCTCTTTATAGACATTTCTGCACCTTAGCATAGTGAGCTGTTTACAGTCTGTAACAGCAGTATAACAGCCTGTAAAGCAACATCTATCCAGGCAGTGTGAGCTCCCTAAAAGTATTGGGAGTGATTATGAAAGGACAGAGTGGATTCCATATCCTTTAGTTAGTCTGGAGAAAGAGAAGGACACAAGAACAACAAAAACCAGTACTAAGAGCAGAGCAAAGACGTAGATAGGAGCTTGTTAATTTGGCAGCAGCTGTTTTACAGAAGGCTAATGTGGATAGGTGCCATTCCTGTTATCTGAGTAGCACTGGCTACTTGGCAAAAAAACTTCTGAACATGATCATTAGGATGCTAAAAGAAGGGGAGATCAGAGGGTGTGCTTCATTTGACATGGAAGCTGTTTTGTGAGGAGGGGGAGCTTGTTCCTCTGGTTTGCAGGAAGGACTGTCACACCTTGGTCTGTGTGACACAGTGATGACAACGCTACACCCTTTAAGTGAGCAATCTTTGGCTAGGTTCAGTGTCAGCTCCATGCTATACTTTGTGGAAAATGCAACAGTATCATGAGCTTATGCTGAATCAAATGTGCGTAATGGCATCTCTCCATAAATGACCAGCTAATGATTGAAAAAGGAACGGATTTAGTCTCTAGTGTTCTAATCTAGTCTAGAGTTCCACAAATCAGGATGCACTGATCACATCACTAGGAGAAGTGGGATCAGAAAAAATCTTCATTCTGTTCTTCAGAAAAAAGATCTTTATTCTGCATATTTGAAATGGCAATCATCTTGGCCTTCCTTTGAAGTTGTGTTTGGAGTCTTTGGAAGGAGGGGAGTCAAATTTTTGAAAGGGTAGATAATGGCAGGACAAGGAGAAATCATTTTAAATTGAAGGAGGGAAGATTTAGGCTGAATATCCAGGGAAATTCTTTACTAAGAGAGTGGTGAGGTGCTGGAACAGGCTGCCCAGAGAGGTTGTGGATGCCCCGTCCCTGGAGGTGTTCAAGGCCAGGCTCGATGGGGCCCCAGGCAGCCTGATCTAGTATTAGATATGAAGTTGGTGGCCCTGCCTGTGGTAGGGGAGTTGGAGCTTGATGATCCTTGAGGTCCCTTCCAACCCAAGGCATTCTACAATTCTATGAGGCAGATGGGGATTGTTAGCTTCCACGTTCTCAACATTCAATGCCAAATGGTTACGTGATTTAAAAAATCCTCCCTTTCTAAAACTTTTGCAGAATTCAGAAGTGCAGTGAGTGCATAGAACACTAGTGATTGTGAGGGCAAAATGTGACGGTGTTCTTGAAGGAATACAGTTCTTGCTGAATGGTAACACTTCTCCTTTCTTCAG
Seq C2 exon
GTACAAGGCATGTCTTTCATTGCAGCAGTACTGATTTTGAACTTGGATACTGCAGATGCCTTCATTGCATTTTCTAACCTTTTAAATAAGCCCTGTCAAATGGCGTTTTTCCGTGTGGACCATGGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546:ENSGALT00000025058:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.1=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(18.4=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTTACCATGACACATTGCA
R:
AAGGCCATGGTCCACACGG
Band lengths:
198-1885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]