MmuINT0157271 @ mm9
Intron Retention
Gene
ENSMUSG00000029192 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:MGI Symbol;Acc:MGI:1098708]
Coordinates
chr5:36850227-36851080:-
Coord C1 exon
chr5:36851009-36851080
Coord A exon
chr5:36850356-36851008
Coord C2 exon
chr5:36850227-36850355
Length
653 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
ACCTTTCTCTCCTTCCTCAGGTT
3' ss Score
12.88
Exon sequences
Seq C1 exon
GGTGGTCCGTATCATGACATGTTGCACAGTATTTTGGGCGCTTATACTTGTTACCGGCCGGATGTGGGTTAT
Seq A exon
GTAAGTGATGTTTTCCAGTTTTGTTTTTTATGATGTTATTATCTATAAAGAAAGTCAAAACATTGCCCATCTTTTATATTGAATGTTATTGTGGCTTTTTGAGGAGTATGAAAAATCTTGAGATGAATAAGTTGGTCCAGTGTCCTTGGACAAGTTGGGCTGATGCAGCTGCTCTGTGGCATGTGTCGCATTTTAACTAGATGTGAAGGTCACTTTTTGCACGTGATTTACCCCTGACATTAGAAGAGGCTTTACCATTAAACATTTTTCTAAAGTGTGCTGCCGCTATTCCTGTGTTTAACAGATGTGTATATGTGCATGGTCTTAAGCCTGCTAAATTCATATGTGTGACCACAGCACCACACCCAGCATGGCACATACCAGAGGGTAATATTTCAGATGTCAAGGCCTATGGTGAGGTTGGTTTAAGGTTTTCCATTAGGAGGGGATAGGGGATGGAGGGGAAGCAGGTGGTAATGGCCGGAGCTGTGGCTCTGTGGAGGGTGGGTCTGGTCTGACGGGTTTATTTAGGTGGTAGAAGGGTAGCTGTGTGGGCCTTTTTAGTGAGAAGGTGTTTGATTTCTCATGACAAGTAAAAGCTGCTTTGACCTTTTGGCCACATTAGTTAACATCACCTTTCTCTCCTTCCTCAG
Seq C2 exon
GTTCAGGGCATGTCCTTTATAGCTGCAGTGTTGATCTTGAACCTCGATACTGCAGATGCCTTTATTGCTTTTTCTAATCTTTTGAATAAACCCTGTCAAATGGCGTTTTTCCGAGTGGACCATGGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029192-Tbc1d14:NM_133910:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.1=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTCCGTATCATGACATGT
R:
GCCATGGTCCACTCGGAAAAA
Band lengths:
198-851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: