RnoINT0147936 @ rn6
Intron Retention
Gene
ENSRNOG00000006400 | Tbc1d14
Description
TBC1 domain family, member 14 [Source:RGD Symbol;Acc:1309993]
Coordinates
chr14:79425686-79426540:+
Coord C1 exon
chr14:79425686-79425757
Coord A exon
chr14:79425758-79426411
Coord C2 exon
chr14:79426412-79426540
Length
654 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
ACCTTTCTCTCCTTCCTCAGGTT
3' ss Score
12.88
Exon sequences
Seq C1 exon
GGTGGTCCATATCATGACATGTTGCACAGTATTTTGGGCGCTTATACTTGTTACCGGCCGGATGTGGGTTAT
Seq A exon
GTAAGTGATGTTTTCCAGTTTTTTTTTATGATGTTATCGTCTATAAAAAAAAAAAGTCAAAACATTGCCCATCTTTTATATCGAATCTCATTGTGGCTTTTTGAGGACTATGCAAAATCTTGAGATAAATAAGTTGTTTCAGTTTCCTTGGCCAAGTTGGGTTGAAGCAGCTGCTCTGTGGTATGCATCGCATTTTAACTAGATGTGATGCTTACTTTTTGCACGCGATTTACTCCTGACATTAAATAGAAAAAGCTTTACCATTAACCATTTTTCGAAAGTGTGCTGCTGCTATTCCTGTGGTTTAACAGATGTGTATGTGTGCATGGTCTTAAGCCTGCTAAATTCATGTGTGACCACAGCACCAACCCAGTATGGCACATACCAGAGGGCAATATTTCAGATGCCAAAGGCCTATGGTGGGGTTGGCTTATGGTTTTTCATTAGGAGGGGGTAAAGGATAGAGGGGAAGCAGGTGGCTGATAGCCAGAGCTGTGGCTCTGCAGAGGGTGGGTCTGGTTCGACAGGGTTTATTCAGGTGGTGAAAGGGTAGCTGTGTAGGCCTTTTTAGTGGAAAGCTGGTTTCTCATAAATAAAAACTGCTCTGACCTTTATGGCCACATTAGTTAACATAACCTTTCTCTCCTTCCTCAG
Seq C2 exon
GTTCAGGGCATGTCCTTTATAGCTGCAGTGTTGATCTTGAACCTCGATACTGCAGATGCCTTTATTGCTTTTTCTAATCTTTTGAATAAACCCTGTCAAATGGCGTTTTTCCGAGTGGACCATGGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006400:ENSRNOT00000058414:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.1=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTCCATATCATGACATGT
R:
GCCATGGTCCACTCGGAAAAA
Band lengths:
198-852
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]