HsaINT0164000 @ hg19
Intron Retention
Gene
ENSG00000132405 | TBC1D14
Description
TBC1 domain family, member 14 [Source:HGNC Symbol;Acc:29246]
Coordinates
chr4:7011604-7012508:+
Coord C1 exon
chr4:7011604-7011675
Coord A exon
chr4:7011676-7012379
Coord C2 exon
chr4:7012380-7012508
Length
704 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
GCCTTTCTCTCCTCTCTCAGGTC
3' ss Score
12.68
Exon sequences
Seq C1 exon
GGTGGTCCATATCATGACATGTTGCACAGTATTTTGGGCGCTTATACTTGTTACCGGCCAGATGTGGGTTAT
Seq A exon
GTAAGTGAAGTTTCTCAGTATTTTATAATGTTGTTATCTAAAAAGAAAGTCAGATATTGTCCAGCACGTGTTAGCTGCAAATGTCATGCCAGTGCCTTCGTTTTTGCCGAGGAGTATGAAAAGTCTCGTGGTAAGTGAGTTAAGTGAGTTGACTCAGGTTCCTCTTAAAGAAATTGAGCTGTCGTGGCTGCTCTGGGGCATTAATCACATTTTAATCGAATGCAATTTTCATTTTTGGCATGTGACTTTTTTCCAACATTAAATCAAAGAAACCTTAACCACGTTAAAAGCAGCAACCATTAAAAAGCACTGCTGATACTTCTGTGGCTTCGCGGATGTGTGTGCGCATGCATGGTTTGATATTAAGCTTATTGAGATAGATAACACAAGTCTACGGCACCGGGACACTGGACATAGGAAAGAGCAGTATTTCAGATGCTCTGGGCCTAAGAGGGCTGGTTTAGGGTTTTCCATTTGCGGGGTGGGAGCAGGGGTGGGAACTGAAGGAGAGCAGGCCGGGTGGCTGGGGTGGCAGAGTGGTGGTTCTGAGTGAGGGCAGTTCAGCGTTGGGTGGCCGGAGGAGTGGGGCGGCTCTAGGGACACTTCTAGTGTGAGGGTGGTAGGTTTGTCTTTGCTAAAAATGAACACACTACGGTGACCCTGTGGCCACTGTGATTTTAACGTGCCTTTCTCTCCTCTCTCAG
Seq C2 exon
GTCCAGGGCATGTCCTTCATAGCAGCAGTGTTGATCTTGAACTTAGATACTGCAGATGCCTTTATTGCCTTTTCTAACCTTCTGAATAAACCCTGTCAAATGGCGTTTTTTAGAGTGGACCATGGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132405-TBC1D14:NM_020773:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(10.1=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=PD(60.0=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCATATCATGACATGTTGCA
R:
AGGCCATGGTCCACTCTAAAA
Band lengths:
198-902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)