BtaINT0146754 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004456 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr15:32334716-32336047:+
Coord C1 exon
chr15:32334716-32334879
Coord A exon
chr15:32334880-32335798
Coord C2 exon
chr15:32335799-32336047
Length
919 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
CACAACTTTTTCCCTTATAGTGT
3' ss Score
8.79
Exon sequences
Seq C1 exon
TCCAATGGCACTCATATCATGTATAAAAACACTATTTGGATCGAAAGTGCCAACAATACTGGCAACATCATCACCAGGGACAGGACGATCAATGTGGAATTTTCATGTGCTTATGAGCTCGATATCAAGATCTCCTTGGACTCTGTTGTGAAGCCTATGCTAAG
Seq A exon
GTAGAGAATCTCACGGGCTGTGCACTTCGCTCTGTCTTTTCCTTGACAGTTAAGGTTAGCATAATCAAAATTGCTAGCATCTGTCTTTGAAGCACTAGGAAAGAATAATTCATGTTTTCTGAACTCAGATGTCTTACACCAGTGCTGTTCGATAGAACTTTCTACAGGGATGGAAGTGTCCCATATCTGTGCTGTCCAATGCAGTAGCTGTATGTGAGCGTTGAGCTCTTGAAATGTGCCAGGGGAGCAGGGCACTGAGGAAGTGAATTTTTAGTTTAATTTTAATGGCCACATGTAGCCTAGTAGACTTTACTTCTCTCTGCCTGGCTTTCCCTCTGCATTTTCAGCTTGGAAAATGGTGATTGGATAGACAGCATTGTTTGGGGTTCCCTACTCATGACTGTGAGAACCGGAATATTTGCTGCCATGTCAGTAAACAAAGGATATCACAGTCATCAGGGAGTGCAGCCACCGTGAATGGTGAGCTGATGAGACCTGAGGAAACTCAGGAAGGAAAGAACACCTGCCATCTAGCAGCCACCAGACTGTAGCCACTCCCTAAATTGAGCCCTGAAAAAAAGAAGCTTAAGATGTGAAAAAGGATACTGGCCCCAGATAGCTGAGGTGCATATCCAAGGAATGATTTCAGTGAGCCCAGACTCTTGCATCTTCCCGTGCATAGAAAAGCACTGAATTCCTTAACTTGGGATATCTGGTTTTCTTTAATTAACAATAATTTTTGGATGTTCAGATTACCCTTTGTTGCAAAACTTCTATATAACCTGGCCCCTCCCCTCCCATTCTGGGAGCAGTTCTGTCAGGGTCATTTGAAGTCCTACAAATTCCCACCAAATAAAACATAACTCTCAACTTTCAGGTTGTGAATATTTTTTTAAGTCCACAACTTTTTCCCTTATAG
Seq C2 exon
TGTCATTAACCTGACGGTTCCAACTCAAGAAGGCAGCTTCACCACCAAGATGGCACTCTACAAAAACGCCTCCTACAAACATCCTTACCGCCAGGGTGAAGTTGTACTGACAACTCGAGATGTGCTGTACGTTGGGGTCTTTGTGGTTGGAGCTGACTCCACACATCTCATTCTGACATTGAACAAATGTTACGCCACCCCATCCCGTGACAGCAACGACAAGCTCCGATACTTCATCATTGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004456:ENSBTAT00000047085:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(21.2=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACATCATCACCAGGGAC
R:
GATGAAGTATCGGAGCTTGTCGT
Band lengths:
342-1261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development