DreINT0161857 @ danRer10
Intron Retention
Gene
ENSDARG00000059558 | tecta
Description
tectorin alpha [Source:ZFIN;Acc:ZDB-GENE-110411-120]
Coordinates
chr5:62498570-62500408:-
Coord C1 exon
chr5:62500245-62500408
Coord A exon
chr5:62498819-62500244
Coord C2 exon
chr5:62498570-62498818
Length
1426 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TTTCTTTTTGTTGTCCACAGTGT
3' ss Score
11.62
Exon sequences
Seq C1 exon
TCAAATGGAACACACATTATGTACAAGAACACGGTGTGGATCGAGAGTTTGAACAACACTGGGAGTGTGGTGACGCGCGACAAAATGATCAACGTGGAGTTTTCCTGTGCGTATGAACTGGACATCAAGATATCCTTGGAGACCGTACTGAAGCCAATGCTCAG
Seq A exon
GTCAGCTGACAGACGCCATTCATTCACCATTACAGAAAACAAAAATCTACAAAGGTTAGGGATGTGCAGTCTGCTCTGCTCCGCTTTCAGAAAGCTGAAAACCTGTAACCATTGACTTACACTCACCGGCCACTTTATTAGGTATACCTGTCCAATTGCTTGTTAATGCAATTTTCTAACAGCCAATTACAAGGAAGAAACATAGTTTGTTACAATGTACTATAGTGTAAATACATGTATTTACTGTGTACTTATGCTTGATTAAATACATGTAATTATTACATCTGTAATTAACTTTTGTAATTACATTTGTAAATACACTGTTGACCATCTCTTACACCTTAATCTACCCTTAAACCTACCCATGCCACCAAACCTGTCCATAACCCAACCTCTATTCCAACTCAAAAGTGTTCTCAAATGTTTATGAACACAGTAAGTACATTGTATTTATTTTTTGATGTAAGTACATAGTAGTTAGGGACACTTAATATAAAGTGCATTATGCATTGGGTCCCGTGATGCTATCATGGTCAAGATATTCTGCTGCATTAAACCGAGCATCAGAACAGGAAAGAAAGTTAATTAAAGTGACTTTTGATTTTGGCATGCTGGTCTGAGTATTTCAGAAACTGCTGATCAACTGGGATTTTCACGCACAACCATCTCTAGGGTTTACAGAGAATGGTCAGAAATGGAGAAAATGGTGTTGGTGATATTTTCTTGGCACACTTTGGGCTAATTAGTACCAATTGAGCATCGTGTCAACACCACAGCCTGCCTGAGTATTGTTGCTGACCATGTCCATATGACCACAGTGCACCCATTTTCTGATGGCTACTTCCAGCAGGATAACGCACCATGTCATAAAGCGTGAATCATCTCAGACTGGTTTCTTGAACATGATAATGAGTTCACTGTACTCAAATGGCCTCCACAGTCACCAAATGTCAATCCAATAGAGCATCTTTGGGATGTGGTGGAATGGGAGATTCGCATCATTAGTGTGCAGCAGACAAATCTGCAGCAACTGCGTGATGCTCTCATCTTAATATGGACCAAAATCTCTGAGGAATATTTCCAGTACCTTGTTGAATCTATGCCACAAAGGATTAAGGCAATTCTGAAGGCAAAAGGGAGTCCAACCCAGTACTAGTAAGGTGTACCTAATAAAGTGGCCAGTGAGTTTATATAGTACAAAAACTATGTAAGTCAATGGTTACAGGTTTTCAGCATTCTATAAAATATCTTCTTTTGTGTTCAACAGGATTAATGGTGAATTTCCCCTTTAAAATAAATAAATACCAAGAAAGCTGATCAAATACATAATGTAACTCATTTCATTAGCACTGTACAGTTGACTGCACCACAGATAAGATAATGATTAAAGATATAATAACTCTCTCTTTCTTTTTGTTGTCCACAG
Seq C2 exon
TGTCATAAACCTCACACTGCCAACCCAAGAGGGTAACTTCATCACAAAAATGGCCTTATACAAGAACGCCTCATACCGGCACCCGTACCGCGAGGGAGAGGTTGTGCTGAGCACCAGAGACGTTCTGTTTGTGGGGGTGTTTGTGGAAGGAGCAGATGACAAACAGCTTATTCTCATTGTTAACATGTGCTGGGCTACACCATCTCGTTACAGCAATGATCGACTCCGCTACATTATCATAGAGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059558:ENSDART00000149979:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(21.2=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAACACGGTGTGGATCG
R:
GGTGTAGCCCAGCACATGTTA
Band lengths:
343-1769
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]