HsaINT0165589 @ hg19
Intron Retention
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:11720]
Coordinates
chr11:121038763-121039634:+
Coord C1 exon
chr11:121038763-121038926
Coord A exon
chr11:121038927-121039385
Coord C2 exon
chr11:121039386-121039634
Length
459 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CATAATTGTTTCCGTTTTAGTGT
3' ss Score
9.07
Exon sequences
Seq C1 exon
TCCAATGGCACGCATATCATGTATAAAAACACACTCTGGATCGAAAGCGCCAACAACACTGGCAACATCATCACCAGGGACCGCACGATCAATGTGGAATTTTCATGTGCTTATGAGCTGGATATCAAGATCTCCTTGGATTCTGTTGTGAAGCCTATGCTAAG
Seq A exon
GTAAGGTGTCTCCTGGGCTGTGCACATTGCTTTTTCTATTCCTTGACAGTTAAGGTTAGCATAATCAAAATTGCTAGCGTTTGTCTTTGATGCCCTAGGAAAAACATAATTCACGTTTCTTGAGCCTAAATGCTTTCAACCAACATTGTTCAATAGAACTCTCTGTGACGATGGAAATATTCCATCTGTACTGTTTAATGTGGTGGCTACATGTGGCTGCTCAGCACTTGAAATGTGGCTCAGGGGGCTGCGGAATTGAATTTTTAATTTTATTTAATTTCATTTCATTTAAATGTAAATTGCCCCATGTGGCTAGCAGGTACTGTATTGGACAGCACAGCCTTAGACTTTGCTACTACGTGCTTTGCTTTCCCTCTGCATTCTCAGCCTGAAAAATGGTAGGTAATTGAATAGGTAACATTGTTTTGGATTCCTGTCTCATAATTGTTTCCGTTTTAG
Seq C2 exon
TGTAATTAACCTGACAGTTCCAACCCAAGAAGGCAGCTTCATCACCAAGATGGCTCTCTACAAAAACGCCTCCTACAAACATCCTTACCGCCAGGGTGAAGTAGTGTTGACGACTCGAGATGTGCTGTATGTAGGGGTTTTTGTGGTTGGAGCTGACGCCACACATTTAATCCTAACACTCAACAAATGCTATGCCACACCCACCCGAGATAGCAATGATAAGCTCCGATATTTCATCATTGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927-TECTA:NM_005422:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(21.2=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGAAAGCGCCAACAACAC
R:
TCATTGCTATCTCGGGTGGGT
Band lengths:
345-804
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)