RnoINT0149340 @ rn6
Intron Retention
Gene
ENSRNOG00000031126 | Tecta
Description
tectorin alpha [Source:RGD Symbol;Acc:1309824]
Coordinates
chr8:46610922-46611812:-
Coord C1 exon
chr8:46611649-46611812
Coord A exon
chr8:46611171-46611648
Coord C2 exon
chr8:46610922-46611170
Length
478 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TATGATTCCTTCTTTGTTAGTGT
3' ss Score
6.1
Exon sequences
Seq C1 exon
TCCAATGGTACTCATATCATGTATAAAAACACAATCTGGATCGAAAGTGCCAACAACACAGGCAACATCATCACGAGGGACCGCACCATCAATGTGGAATTTTCATGCGCGTATGAGCTAGATATCAAGATCTCCTTGGACTCTGTTGTGAAGCCTATGCTAAG
Seq A exon
GTAAAGAATTTCAGGGGCTGCTCTCGTGCTTCCTGTGTTCTCCACAGCCAAGGTTAACAGCATCGGAACAGCTAGCATTTGTCTTTGAAGTGCCGGGGAAAATATAATTCATATTTCTGGAAACAAAATGCTCTAGACTAATGACCGGAAGGCTTGGTTTCTGAATTATGGGATACAGTAACTACCTGTGACCAATGAGTGTTTGAAATTTGGCTCAGGGGACTGATAAATTGAATTTTTTTATTTTATTTAATTTCATCTAAATGTAAATTGCCCCATGTAGGGACCAAATTAGATAAGGCGGCCTTAGACTGGAGGACTGCTGGAGGACTGCATGCTTGCTCTGCCTTCCCTCTCTACACTGTAGCTTGAAAAATGACAGTGAATCGAACAAATAACATTGGGTGTCTTTTTTTTTTCAAGTTTATTTATTTATTCTTTTGGTTCCCTGCCTCACATATGATTCCTTCTTTGTTAG
Seq C2 exon
TGTCATCAACCTGACAGTTCCAACCCAAGAGGGCAGCTTCACCACCAAGATGGCGCTCTATAAAAACGCGTCCTACAAACACCCTTACCGCCAGGGGGAGGTCGTGCTGACGACCCGGGATGTGCTCTACGTGGGGGTCTTTGTGGTTGGCGCTGACTCCACACACTTGATTCTCACACTCAACAAATGCTACGCCACCCCGTCCCGCGACAGCAACGACAAACTCCGGTACTTCATCATCGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031126:ENSRNOT00000052293:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(21.2=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAAGTGCCAACAACACAGG
R:
GTACCGGAGTTTGTCGTTGCT
Band lengths:
355-833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]