GgaINT0138327 @ galGal4
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr24:3532778-3533296:-
Coord C1 exon
chr24:3533133-3533296
Coord A exon
chr24:3533027-3533132
Coord C2 exon
chr24:3532778-3533026
Length
106 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
ATTTGTTTTCTTTTTATTAGTGT
3' ss Score
8.05
Exon sequences
Seq C1 exon
TCCAACAGCACTCACATCGTATACAAGAACACGGTGTGGATTGAAAGCGCAAACAACACAGGCAATATCATCACCCGGGACCGGACCATCAACGTGGAGTTTTCCTGTGCCTATGAGCTGGACATCAAGATCTCTCTGGACTCAGTCGTGCGGCCAATGCTCAG
Seq A exon
GTCAGAGCAGGGCAAGTAGGGCACGTGGGTGCATGCACAGCAAGGTTACAATATGCAAACAACAGCCAGTGCGAGGTCCAAGACTCATTTGTTTTCTTTTTATTAG
Seq C2 exon
TGTGATCAACCTGACAGTGCCAACGCAGGAAGGGAGCTTCACGACCAAGATGGCCCTATACAAGAACTCCTCCTACAAGCACCCGTACCGGCAGGGGGAGGTGGTGCTGACCACACGGGATGTGCTCTATGTGGGGGTCTTTGTGGTGGGGGCTGACTCCAACCACCTGATCCTGATGCTGAACAAGTGCTATGCAACGCCCTCGCGGGACAGCAATGACAAACTACGCTACTTCATCATTGAGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000040861:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(21.2=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGTGCCTATGAGCTGGA
R:
GCATCAGGATCAGGTGGTTGG
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]