GgaINT0138327 @ galGal3
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
NA
Coordinates
chr24:3567443-3567961:-
Coord C1 exon
chr24:3567798-3567961
Coord A exon
chr24:3567692-3567797
Coord C2 exon
chr24:3567443-3567691
Length
106 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
ATTTGTTTTCTTTTTATTAGTGT
3' ss Score
8.05
Exon sequences
Seq C1 exon
TCCAACAGCACTCACATCGTATACAAGAACACGGTGTGGATTGAAAGCGCAAACAACACAGGCAATATCATCACCCGGGACCGGACCATCAACGTGGAGTTTTCCTGTGCCTATGAGCTGGACATCAAGATCTCTCTGGACTCAGTCGTGCGGCCAATGCTCAG
Seq A exon
GTCAGAGCAGGGCAAGTAGGGCACGTGGGTGCATGCACAGCAAGGTTACAATATGCAAACAACAGCCAGTGCGAGGTCCAAGACTCATTTGTTTTCTTTTTATTAG
Seq C2 exon
TGTGATCAACCTGACAGTGCCAACGCAGGAAGGGAGCTTCACGACCAAGATGGCCCTATACAAGAACTCCTCCTACAAGCACCCGTACCGGCAGGGGGAGGTGGTGCTGACCACACGGGATGTGCTCTATGTGGGGGTCTTTGTGGTGGGGGCTGACTCCAACCACCTGATCCTGATGCTGAACAAGTGCTATGCAACGCCCTCGCGGGACAGCAATGACAAACTACGCTACTTCATCATTGAGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000010677:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(22.7=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(34.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGTGCCTATGAGCTGGA
R:
GCATCAGGATCAGGTGGTTGG
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]