MmuINT0158789 @ mm10
Intron Retention
Gene
ENSMUSG00000037705 | Tecta
Description
tectorin alpha [Source:MGI Symbol;Acc:MGI:109575]
Coordinates
chr9:42337106-42337978:-
Coord C1 exon
chr9:42337815-42337978
Coord A exon
chr9:42337355-42337814
Coord C2 exon
chr9:42337106-42337354
Length
460 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TACAATCCCTTCTTTGTTAGTGT
3' ss Score
5.87
Exon sequences
Seq C1 exon
TCCAATGGCACTCATATCATGTATAAAAACACAATCTGGATTGAAAGTGCCAACAACACTGGCAACATCATCACGAGGGACCGCACGATCAATGTGGAATTTTCATGCGCTTATGAGCTAGATATCAAGATCTCCTTAGACTCTGTCGTGAAGCCTATGCTAAG
Seq A exon
GTAAAGACTTTCAGGGGCTGCTCTCCTGCTTTCTCTCTTCTTGACAGCTAAGGTTAGCAGCATCAGAGTAGCTAGCATTTGTCTTTGAAGCACCAGGGAAAATATAATTCATGTTTCTGGAAACAAAATGCTCTAGACTAAATGACCAGAAGGCTTGCTTTCTGAATAATGTGATACAGTAACTACCTGTGACCAATGAGTGCTTGAAATTTGGCTCAGGGGACTGATAAATTGAATTTTTTATTTTATTTAATTTCATTTAAATGTAAATTGCCCCATGTAGGGACCAAATTAGATAAGGCAGCTTTAAACTTGAGGACTGCATGCCATGTCTTCCCTCTACACTGTAGCTTGAAAAAAATGGCAGTTAATTGAATAAATAACATTGGGTGTTTTTTTTTCCGAATTTTATTTATTTATTTTTGGTTCCTTGCCTCACATACAATCCCTTCTTTGTTAG
Seq C2 exon
TGTCATCAACCTGACAGTTCCGACCCAGGAGGGCAGCTTCACCACCAAGATGGCACTCTATAAAAATGCTTCCTACAAACACCCTTACCGCCAAGGGGAAGTTGTGCTGACAACTCGGGATGTGCTGTACGTGGGCGTCTTTGTGGTCGGAGCTGACTCTACACACTTGATTCTCACACTCAACAAATGCTACGCCACCCCCTCCCGAGACAGCAACGACAAGCTTCGGTACTTCATCATCGAAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037705:ENSMUST00000042190:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(21.2=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACATCATCACGAGGGAC
R:
GATGAAGTACCGAAGCTTGTCGT
Band lengths:
342-802
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types