BtaINT0151645 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013510 | TOR2A
Description
Bos taurus torsin family 2, member A (TOR2A), mRNA. [Source:RefSeq mRNA;Acc:NM_001083476]
Coordinates
chr11:98425082-98426287:-
Coord C1 exon
chr11:98426160-98426287
Coord A exon
chr11:98425836-98426159
Coord C2 exon
chr11:98425082-98425835
Length
324 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
CCCATGGCTCCACCCTGCAGATG
3' ss Score
8.85
Exon sequences
Seq C1 exon
CAACACCGGTGGTGAGCAGATCAACCAGGTGGTGCTGGAGGCGTGGCGCAGCCGCCGGGAACGTGAAGAGATCGGCCTGCAGGAGCTGGGGCCGGTCATCTCTCAGGCTGTGCTGGACAACCCGCACC
Seq A exon
GTGAGTTCAGCGGAGGACCCCACGCCAGAGGGGCTTCCAGACTCGGGTCTCACTCCCAGATCACACCCAGGGCTGGGCTGGGCTGGACTCCCTGGGGGTGGGCCAGGCTCTCCCAGGTCAGATGCTCAGCCCACCGACCCAGTACTTTCCAGCCCAGGCTTTGGTGCTCGGGGCTGGCGGACAGCTTCCCCCGAGCCCAGCACCCAAGCTGGGCTGGGAGGATTCAGGCCAGCAGCCTTCCTGCACTTCCTTCCCTGTGGGGGTGGGTGGGGGCCTGGCTGACCCCTGTGAACCACAGCCTCTTCCCATGGCTCCACCCTGCAG
Seq C2 exon
ATGGCTTCTGGCGCTCGGGCATCATGGAAGAGCATCTCCTGGACGTTCTGGTGCCCTTCCTGCCACTCCAGCGGCACCACGTGCGGCACTGTGTGCTCAACGAGCTGGCCCATCTGGGCCTGGAGCCCAGGGATGAGGTGGTCCAGGCTGTGCTGGACAGCACCATCTTCTTCCCTGAGGACGAGCCGCTCTTTTCCTCCAATGGCTGCAAGATGGTGGCTTCCCGGATCGCCTTCTTCCTCTGACTCTCCCAGGTGGCATCCCTGTCGTCCTCTACCTGGCCAGGTTGTGAAGGAAAGCCCTGGACCCTCTGCCGGAGGGTCCCTGGTCCTGCAGCGTGGGACCCAGAGCATACTGTGAAGATGAGGAGGGCTGTTGGCTGGGCCGTGAGACAGAAGGCCGGAGCAGGCCCTGGCTCTTCATTGTCTGAGGGCATCTTGGCCTTTGCCTCCTTCCTCAGGGAAATCACCGGTCACCCCAGAATTTCAAGGAGCCTTGACCGCAGCCTGAGCCTTAAAATGTGAATTGTAACTCAGGGACAGTGGCTCGTGGCTGCTCCCTCCTTCTTCTCTCTGTTCCTCTGGCCCTTGCCCCAGTACCATATCCACGCCCAACCCTGTGTCCCCATATGGTAAAACCAGGCTGAGACTTCTGTCTCCGTGAACAGAGGGACTCAAGTTCACACTGGAGCTGAGCTTTTCAAGTTTTTAATTTTGTACATGAAGAAAACAAATACAATAAATTTAGTCACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013510:ENSBTAT00000017963:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGTGAAGAGATCGGCCTG
R:
AGGTAGAGGACGACAGGGATG
Band lengths:
349-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development