GgaINT0124464 @ galGal4
Intron Retention
Gene
ENSGALG00000026424 | TOR2A
Description
torsin family 2, member A [Source:HGNC Symbol;Acc:HGNC:11996]
Coordinates
chr17:4925795-4927877:+
Coord C1 exon
chr17:4925795-4925922
Coord A exon
chr17:4925923-4926272
Coord C2 exon
chr17:4926273-4927877
Length
350 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TGTCTCCTTTGCTTTTGCAGGTG
3' ss Score
13.29
Exon sequences
Seq C1 exon
CAATGCAGGAGGAGAGCAGATCAATGAAATGACACTGGATCTCTGGCGTGCCCACCAGGACCGGGAGGAGATCAGCCTGCAGGACATGGAGGCAGCCATCTCCAAAGCGGTGTTTGAGAACCCTCAGA
Seq A exon
GTGAGTGAATCTCTGCAGTGTTTCAGCAGGGAGCAGAGCCCAGCAGAGGGAGCCAGGCCCACTCCACAAAGGCACAGATGCTCTCTGGGATCTCCTAAGCAGGCAGAAGCTTTGTCCATGTCACAGAGCAGAGCTTAAAATCCGAGCAGTTCAGCTAAATCTGACCATTCCTGGGGAAAGACAAATCTATCTGGGGAAGGAGGGGTTGACAACTGATGGGTTTAAGTCCTTGTACAAAACGAGCAGGTCTGTCTTCAGCTGAGTATCCTGGCTTCAAACAGTGCAGCTCTTTGAATTCCAAGGACCACAGACACCGAAAGTAAAACCTTCTGTCTCCTTTGCTTTTGCAG
Seq C2 exon
GTGGATTCTGGAGATCTGGGATCATTCACGAACATCTCATTGATTTTGTTGTGCCCTTCCTCCCACTGAAGCGCCACCACGTAAAGCAATGCGTCATCAATGAACTTGTGCAGCAAGGGCTAGAAGTACGTCACGGTGTTGTCCAGGAGGTGGCTGACAGCATCCCCTACTTCCCAGAAGAAGAGAAATTATTTTCATCAACTGGCTGCAAAACTGTAGCCTCCCGGATCAGCTTTTTCTTCTAGCCTTGCTCAGATCCATAGGGGACGTATATGGAGCTGTAAAGCTGCAGACTGGTGGGATGAGCACCAAGAGCTACATGTTACCATGCAGTAGCACAAATGCTCTCCTGCTGAACTTGTCTTTCCAGCCCTAAGGGCATTACTGCAGGATGCAACTGTGGGAGCAAGTGCAAGTGATTTGATTTAAAGCACTTAATCATTTATTCTGTGGCCAGGTGAAGGTGGGTATGCTCAGCCTGGTGCACCGCTCCAGTCGTATCTGTGATGAAGAAGGGAAGATGTCAGGAGAGACTGCAGTGTCAGGGAAGTTTCTTACCCTGTCAGCAGCACCAATCTGTAGCTCTCTCTTCTGGCAGCTTCTGTTATCTAATGCACGAAGATTCTGAGCCCAAAAAAGAATATATATATTTTTTAAATACATCATTTTAGCATTTTTAAAAGCCATCTTGTTAAGCATGGCAGTACCTCAGTTCCTTGGTACAACGTGACAGTGCTGGTGCTGACTGCTGCATCACTGGCTGGTGAACACCCTCAACATTACTGTCAAGTTTTCGTTGCAAGGAAATCTTTAGAGCCAACTTCTTTCCAGTTTCCTTTCACTGTGAATAGGTGCTGGTAGGGAGCACCACCAACAACAGGGACATAAGGGAAATGGCAATGCTCAGCCTGCCAAGAACTCAGCTCTCCCTACTTCTTCTGCCCATCTTTCCCCCAAGGTCCAAAGGATTTCTCTGCAGCAAACCACAGCAATGAACAAAACAGGACTTACCTACAAGAAAAAGTTCAGTCCTACCTCCAGGGAGACCATGGTGCTACTAATGGTTTTTAAAAACATTTTTATTCAGTGGTAATTTCTACAGCAGGCTGAGGAATTGGTGCTATGAGCTCTTGAGCTTCTTTGACATCCTTCTGCTGGTCAGATCTTGCAGGCACTGGCTGAACCAGCTCTACTCAGCTTCACAGAAGTGCCACTTATGTGGGGACCTGAGGACAAGTTAGAGAAGTTTGTACTCCGTGCTGTCAAGCATGGGGTGTATGGCACTGCTGGCCTTTGTCCCATTTTAATCTCCACAGTCGGTTACTGGAGCACAGGTCAGAGAATTGTTCATACTCTGAGAATGAACTGCCTGAGAGGACTGTGTGAACAGGGACATTGCTGAAGGTTCCTTATGTTCCTCGCATGCCCTGTGCTGAAATGAGCTGCAAGCACTCAGGACCATTCCAGCCCTCCTCCACATCTGCAGCTTTGTGGACAGCCATTGGAGGAACGGCCTAAATGCAGCCCGGGAGCTGGTCCACGTACAGACCATCCTGCCTGCAAAATGTTAGTATTCCTAATTTTAAAATAAATCTTTTATGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026424:ENSGALT00000043220:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGGTGTTTGAGAACCCTC
R:
TAGCTCTTGGTGCTCATCCCA
Band lengths:
342-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]