MmuINT1033588 @ mm10
Intron Retention
Gene
ENSMUSG00000009563 | Tor2a
Description
torsin family 2, member A [Source:MGI Symbol;Acc:MGI:1353596]
Coordinates
chr2:32760589-32762244:+
Coord C1 exon
chr2:32760589-32760716
Coord A exon
chr2:32760717-32761495
Coord C2 exon
chr2:32761496-32762244
Length
779 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
GCCTCTGTGCCTCCCTGCAGATG
3' ss Score
13.45
Exon sequences
Seq C1 exon
CAATGCTGGTGGTGAGCAGATCAACCAGGTGGCCTTGGAGGCCTGGCGCAGCCACAGGGACAGGGAAGAAATCAGCCTACAGGAGGTGGAGCCAGTAATCTCCCGAGCTGTGATGGACAACCCTCAAC
Seq A exon
GTAAGTTGGCTCGGGGACCAATGTCGGTAGGGCCTTCACACTTAAGTACACCTGAATCTGAAGCACTGTCCACTGCACTGTAGTCCCATCTCTCCCGCCACATTGTCCACTGCACCATAGTCCCATTCCCCCCCCACCACCACATTGTCCACTGCACCATAGTCCCATTCCCCCCCACCATATTGTCCACTGCACTGTAGTCCCATCTCTCCTGCCACATTGTCCACTGCACCATAGTCCCATCCCCCCCACCACCACATTGTCCACTGCACCATAGTCCCATTCCCCCCCACCATATTGTCCACTGCACTGTAGTCCCATCTCTCCTGCCACATTGTCCACTGCACCATAGTCCCGCCCCCCCCACTACATTGTCCACTGCACCATAGTCCCGTTCCCCCGCCACATTGTCCACTGCACTGTAGTCTCATCTCTCCCACCACATTGTCTACTGCACCATAGCCCCGTCCCCCCACCACCGCATTGTCCACTGCACCATAGTCCCGTCCCCCACCACCACTACATTGTCCACTGCACCATAGTCCTGTCCCCTCCCCCACCACATTGTCCACTGCACAGTAGTCCCATCTCTCCCGCCACATTGTCCACTGCACCATAGTCCCGTCCCCCCACCATCACATTGTCCACTGCACTGTAGTCCCATCACCCTCTGCCACATTGTCCACTGCACCACAGTCCCGTCCCTCGCCACACTGTCCACAATGAAGCCTGGATTCCCGACTAGAAATGCTCACCATGGCCTCTGTGCCTCCCTGCAG
Seq C2 exon
ATGGCTTCTGGCGGTCTGGCATCATGGAGGAGCACCTGCTGGACGCTGTGGTGCCCTTCCTCCCGCTCCAGCGGCATCACGTGCGCCACTGCGTACTCAATGAGCTGGCTCAGTTGGGCCTGGAGCCCAGCGAGGAGGTGGTTCAGGCGGTGCTGGACAGCACCACCTACTTCCCTGAGGTAGAACAGCTCTTCTCCTCCAATGGCTGCAAGACAGTGGCCTCCCGACTCACATTTTTCCTCTGAGAAGCCCAGGTGGCATCGCTGCCTCCTCTGCCTGGTCAGAGCAAACACGAAAGGCCTGGGTGGCTCCTGGAAGAAATCTTTCCTAAGCTGGTTGGCAAGTGGGACCCAGAGCACAATGTTAAGATGAAGAAAGGTGTTGGCCAGGCCAAGGAAGAAAGGTCTAGAAGCATCTTTGCTAAGAAACTCCTGGGTACCCCGCAACCTCACAGCCGTGCCATTGCCCTGCAGTCTGAGCCTGAGCCTTCTCAATGTGAACGGCAACTCAGGGACGAAGGCTCCTGGCTGCTTCCAGCTGGGGACTCTTACTGGCATGCCTTGTCTGGCTCCTTTCCCAGACCTCAGCCCACAGACTGTGGCTGGACCCAGCAATCCAGCTAGGCCAGGCTAGCACCTCACAGGTTCCCCAAATGGAAGGACTCAAGCTACTACATGGGCCTGAATTTCAAAGTTTTTAATTTTGTACAAGAGAACAGAGATTAAATAAACTTAGCCTTGGTATTAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009563:ENSMUST00000009707:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCAGATCAACCAGGTGG
R:
AAAAATGTGAGTCGGGAGGCC
Band lengths:
355-1134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types