GgaINT0124464 @ galGal3
Intron Retention
Gene
ENSGALG00000004996 | TOR2A
Description
NA
Coordinates
chr17:5555205-5556195:+
Coord C1 exon
chr17:5555205-5555332
Coord A exon
chr17:5555333-5555682
Coord C2 exon
chr17:5555683-5556195
Length
350 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
TGTCTCCTTTGCTTTTGCAGGTG
3' ss Score
13.29
Exon sequences
Seq C1 exon
CAATGCAGGAGGAGAGCAGATCAATGAAATGACACTGGATCTCTGGCGTGCCCACCAGGACCGGGAGGAGATCAGCCTGCAGGACATGGAGGCAGCCATCTCCAAAGCGGTGTTTGAGAACCCTCAGA
Seq A exon
GTGAGTGAATCTCTGCAGTGTTTCAGCAGGGAGCAGAGCCCAGCAGAGGGAGCCAGGCCCACTCCACAAAGGCACAGATGCTCTCTGGGATCTCCTAAGCAGGCAGAAGCTTTGTCCATGTCACAGAGCAGAGCTTAAAATCCGAGCAGTTCAGCTAAATCTGACCATTCCTGGGGAAAGACAAATCTATCTGGGGAAGGAGGGGTTGACAACTGATGGGTTTAAGTCCTTGTACAAAACGAGCAGGTCTGTCTTCAGCTGAGTATCCTGGCTTCAAACAGTGCAGCTCTTTGAATTCCAAGGACCACAGACACCGAAAGTAAAACCTTCTGTCTCCTTTGCTTTTGCAG
Seq C2 exon
GTGGATTCTGGAGATCTGGGATCATTCACGAACATCTCATTGATTTTGTTGTGCCCTTCCTCCCACTGAAGCGCCACCACGTAAAGCAATGCGTCATCAATGAACTTGTGCAGCAAGGGCTAGAAGTACGTCACGGTGTTGTCCAGGAGGTGGCTGACAGCATCCCCTACTTCCCAGAAGAAGAGAAATTATTTTCATCAACTGGCTGCAAAACTGTAGCCTCCCGGATCAGCTTTTTCTTCTAGCCTTGCTCAGATCCATAGGGGACGTATATGGAGCTGTAAAGCTGCAGACTGGTGGGATGAGCACCAAGAGCTACATGTTACCATGCAGTAGCACAAATGCTCTCCTGCTGAACTTGTCTTTCCAGCCCTAAGGGCATTACTGCAGGATGCAACTGTGGGAGCAAGTGCAAGTGATTTGATTTAAAGCACTTAATCATTTATTCTGTGGCCAGGTGAAGGTGGGTATGCTCAGCCTGGTGCACCGCTCCAGTCGTATCTGTGATGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004996:ENSGALT00000008001:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGGTGTTTGAGAACCCTC
R:
TAGCTCTTGGTGCTCATCCCA
Band lengths:
342-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]