RnoINT0154647 @ rn6
Intron Retention
Gene
ENSRNOG00000022514 | Tor2a
Description
torsin family 2, member A [Source:RGD Symbol;Acc:1359111]
Coordinates
chr3:11798596-11799693:+
Coord C1 exon
chr3:11798596-11798723
Coord A exon
chr3:11798724-11798971
Coord C2 exon
chr3:11798972-11799693
Length
248 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
GCTTCCGTGCCTACCTGCAGATG
3' ss Score
10.08
Exon sequences
Seq C1 exon
CAATACTGGAGGTGAGCAGATCAACCAGGTGGCCCTGGAGGCATGGCGCAGCCGTAGGGACAGGGAAGAAATCAGCCTACAGGAGGTGGAGCCAGCAGTGTCCCAAGCTGTGTTGGACAACCCTCACC
Seq A exon
GTGAGTTGGCTCAGGGATGTGTTGGTAGGGCCTTCACACTTAAGTTTAGTGGGCTGGACATCTAAATCGCAAGCATTGCCCACTGCACTGCAGCCCCCATACCCCAGGTTTCTGCACACATAGCTCTGTGACCTGACCAAGGCCTGTAGCAGCCCCAGCTCCTGCAGCCTGCACTTCACCACCACTAGCCTTGTGAGGCATGACTTCCCAGTTGAAAAGCTCACCATTGCTTCCGTGCCTACCTGCAG
Seq C2 exon
ATGGCTTCTGGCGGTCTGGCATCATGGAGGAGCAGCTGCTGGATGCTGTGGTCCCCTTCCTCCCCCTCCAGCGGCATCATGTGCGCCACTGTGTGCTCAATGAGCTGGCTCAGCTGGGTTTGGAGCCCCGAGAGGAGGTGGTTCAGGCTGTGCTGGACAGTACCACCTACTTCCCTGAGGAGGAGCAGCTCTTCTCCTCCAATGGCTGCAAGACAGTGGCATCCCGAATCACATTTTTCCTCTGAGAACCCCGGGGGCATCATTGCCTCCTCTGCCTAGACAGATCAAACAGACGCCTGGGCGTCTCCTGGAAGAATTCTTCCCTAAGCTGGCTGGCAAGTGGGACCCAGAGCACAGAGTTACGATGAAGAAAGGAGTTGGCAGGCCAAGGAAGAAAGGTCTAGAAGCATCTTTGCTGGGAAATTCCTGGGCACCCCAGAACCTCACAGCCTCGCCATTGCTCTGCGGTCTGAGCCTTCTCAATGTGAACGGCAACTCAGGGACAAAGTGGCTACTCCAGCTGGGGGCTTTTACTGGCACGCCTTGTCTGGTCCCTTCTCCAGATCTCAGCCTATGGCTGGACCTGGCAATCCAGCTAGGCCAGGCAAGCATCTCAGTTTTACCAAATGAAAGGACTCAAGCTGCCACCTGGGCCTGGCTTTCAAAGTTTTTAATTTTGTATGAGAAGAGAGCAGAGATAATAAACTTAGCCATGGTATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022514:ENSRNOT00000030694:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGCAGATCAACCAGGTGG
R:
GCTCCTCCTCAGGGAAGTAGG
Band lengths:
303-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]