BtaINT0151647 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014006 | TOR3A
Description
Bos taurus torsin family 3, member A (TOR3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001080376]
Coordinates
chr16:61859830-61860811:+
Coord C1 exon
chr16:61859830-61859943
Coord A exon
chr16:61859944-61860545
Coord C2 exon
chr16:61860546-61860811
Length
602 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
GGCCTCTTCCCCACCCCTAGGCC
3' ss Score
9.39
Exon sequences
Seq C1 exon
GCTGGAGCCTTGCCCTGCTGGGCCAGCAGTACCTGGATATCTTGAGCACGTGGTCCTGCAGCTTCTGGGACTGCTGCGACAGAGGGGACTGCAAGATCATCAACAACTTCACAG
Seq A exon
GTTAGACCTCACGTGGCCCTCAGGGCCAGGAATCGGGGGGGAGGAGGCAATTCAGGGGAATGCCAAGGCATAGGGCCCCAGCCTCAGCCTGCCCATAGCCGGCAGCGTGGTAGAGACCCTCCCTGTCTCCACCATACCTCCCATACCCTGCACCCTCATGGCTGAAAGGAAGGCCTTGGCAGAGGGCTTTGCCCACAGTAGCTGCTTCAGTAGGTGTTGGCTGAATTAAATTGAAATGAATAAAATAAGGGGGTCTCCATAAAATATTTAGGGGGTCCTGAAACTTCCAGGCAGGAGCAACTTCATGGTAGTCGGGGGCTGGGTTCCTCCTCCAGACAGGACTCTGCAACCCTGCTAGGGGGGTGTCTTCAGAACCTTCAGAAAGGGTGAAATCAATGTGGATTTCTCAAACTCTTCAGAAAATAGCACTGAATCTCTTCTACTGCAAGGTCTGCCCAGTGGCTTCTTATTGTGGAGTCCCCAGACAGGATGGCTCCCACCTCAGAGATGGTCAGCGGTGCTCAGTCTCTCAGCCATCACCAAGCCTGGGGGGGGATGCATCTGTGTGTCCCTGCTCAGCGTGGCCTCTTCCCCACCCCTAG
Seq C2 exon
GCCTCAAGGCGGACCTGCGCGTGCGCCTGCACGGCCAGCACCTAGCCCGGGAGCTGGTCCTGACGGCGGTGAGGGACTACTTAGAGAAGCCCCGGCCGGACAAGGCCCTGGCTCTGTCGTTCCACGGCTGGTCTGGCACAGGCAAGAACTTCGTGGCGCGGATGCTGGCGGAAAACCTGTACCAGGACGGGCTGAGGAGCGACTGTGTCAAGGTGTTCATCTCTACGTTGCACTTCCCTCACCCCAAGAATGTGGACCTGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014006:ENSBTAT00000018609:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(14.7=48.7)
A:
NA
C2:
PF063096=Torsin=FE(68.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTACCTGGATATCTTGAGCAC
R:
CCACATTCTTGGGGTGAGGGA
Band lengths:
344-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development