GgaINT0037392 @ galGal4
Intron Retention
Gene
ENSGALG00000004216 | TOR3A
Description
torsin family 3, member A [Source:HGNC Symbol;Acc:HGNC:11997]
Coordinates
chr8:6227111-6228131:-
Coord C1 exon
chr8:6228018-6228131
Coord A exon
chr8:6227377-6228017
Coord C2 exon
chr8:6227111-6227376
Length
641 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TTTTGCTGTATTCCCTTCAGGGC
3' ss Score
11.59
Exon sequences
Seq C1 exon
GCTGGAGCTTGCCTCTGGTGGGCCAGGATTACCTGGAGATCCTCTCTGCCTGGTACTGCAATTTTGGCAAGTGCTGCAAGACAGGAGACTGCCGGATCATCAACAACATCACAG
Seq A exon
GTGGGTGCTGCAGTCTCCTCTGCTGTTGTCGTTCTTCTAAAAAGCCTATTTTAGCAAGTGATGCATGTAAAAGGCATTTCTGGGGGGAGGAGGGGCTGAGCCACGTCCTGCTTCTCATCACTCATTTGCAGTTCTTGGACTGCAAGAAAGCATGCTCAGTGCACTGCTGTGGTTTGCACCAGCCCTGCCTTCACCTGACAGTTTCATGTGCACAGGGATCTATTTGGCCCCAGGTGTCCCAGGACCCGTGTGCAAGCCCATGCAGGTGTCACTCATTTGCCATCCCTGAAACTTCTGCTTTCCATACAGTCTGCTGGGTGGTACGTGGAGCTCAGGAAATACTACAGAAAGCACTGGGGCTTCAGTGCCCTGTGTAGTCATCAAGTGCTTCCTCCTATTTCCAAAGGGAAAAAGGAGTCAGCGGAAGATCTGTGTCTTTTTGCAGTCAGTGGCAAATATGAGCAGGGCACAGGATTTGTGAGCATCCTGCCTTGTTAACACTGCACCAGCTCAAGGCTCCTCTTGGACACGAGTCCCATCAGCAGGGCTGTGTGGGCTTGGTGCTGTGCAACATCTTATATTCCCAGCAGCAGCAACTGGGCTTCTAGGTTAAGGCTGAGTTTTTGCTGTATTCCCTTCAG
Seq C2 exon
GGCTAGAACTGGACCTCCATGAGCAGCTCCACGGGCAGCACTTGGCCAAAGAAGTTGTCATCCAGGCCGTGCGAGGGTTCCTGCAGAGCCCACAGCCACAGAAGGCTCTGGTCCTCTCCTTCCACGGCTGGTCTGGCACAGGCAAGAACTTTGTGGCCCGCATGGTGGCTGCTCACCTGTACCGGGACGGGCTGAAGAGTGAATGCGTCAGGGTGTTCATCGCGCTCTTCCACTTTCCCCACCACAAGTATGTGGACTCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004216:ENSGALT00000006703:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063096=Torsin=PU(14.7=48.7)
A:
NA
C2:
PF063096=Torsin=FE(68.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCTTGCCTCTGGTG
R:
GAAAGTGGAAGAGCGCGATGA
Band lengths:
350-991
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]